Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g00703 ATGGCCACTCAAATTTCGCCGGCAGTTTCCGCCGCCGTTGTTATTCCGCCCACTTTTCCGCGACGGTTTCTGGTTTTCCAGACTTCAAAAACCGCCCACAGATCTCGAACCACCGGAATCGCACCGCTAATCATGGGCTCCCTCGATAGCTTCGAAGCCGGAATCGTCACCGTCGACGTCAAAACCGCCAAGAACCTCCTCCATTCCGGCTACGCTTTTCTCGACGTCAGGACTGTCGAGGAGTTCAAGGAAGGGCACGTAGCGAATGAGAAGATCGTCAATATTCCGTATCAATTCAATTCTCCAGACGGTAGGGTGAAGAATGATCAGTTTCTGGAGGAGGTGTCGGCGGTCTTTAAGAAAGACGACCGCCTCGTCGTGGGTTGTCGAAGTGGGGTAAGATCTTTGCTCGCCATTGAAGACCTCCGAAATGATGGCTTCGAGCATTTGACAGATCTGGGCGGAGGGCATCTGGCTTGGCTGGCGTATGGATTTCCTGTGGCTAAGCCAAAAGTAAAGACAACTGATCCAAAGAGTGTGGACCTTCAGGCTGACGAGCTTTGA 564 52.48 MATQISPAVSAAVVIPPTFPRRFLVFQTSKTAHRSRTTGIAPLIMGSLDSFEAGIVTVDVKTAKNLLHSGYAFLDVRTVEEFKEGHVANEKIVNIPYQFNSPDGRVKNDQFLEEVSAVFKKDDRLVVGCRSGVRSLLAIEDLRNDGFEHLTDLGGGHLAWLAYGFPVAKPKVKTTDPKSVDLQADEL 187
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6110681 6112759 - CmoCh03G007030.1 Cmo03g00703 378166

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g00703 187 Pfam Rhodanese-like domain 61 161 IPR001763 -
Cmo03g00703 187 ProSiteProfiles Rhodanese domain profile. 67 169 IPR001763 -
Cmo03g00703 187 SMART rhod_4 58 166 IPR001763 -
Cmo03g00703 187 PANTHER THIOSULFATE SULFURTRANSFERASE 18 30 171 - -
Cmo03g00703 187 PANTHER THIOSULFATE SULFURTRANSFERASE 18 30 171 IPR044684 GO:0003824
Cmo03g00703 187 CDD RHOD 62 160 - -
Cmo03g00703 187 Gene3D - 49 168 IPR036873 -
Cmo03g00703 187 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 54 167 IPR036873 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g00703 - - - cpep:111804437 350.517
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00673 Cmo-Chr3:5979235 Cmo03g00703 Cmo-Chr3:6110681 3.58E-28 dispersed
Cmo03g00703 Cmo-Chr3:6110681 Cmo07g00394 Cmo-Chr7:1797472 1.00E-23 dispersed
Cmo03g00702 Cmo-Chr3:6104335 Cmo03g00703 Cmo-Chr3:6110681 2.02E-06 tandem
Cmo10g00089 Cmo-Chr10:395692 Cmo03g00703 Cmo-Chr3:6110681 5.15E-06 transposed
Cmo20g00757 Cmo-Chr20:3801783 Cmo03g00703 Cmo-Chr3:6110681 2.39E-23 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1128 . . . . . . . . . . . . . . . . Cpe10g00671 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo03g00703 . . Cma20g00760 . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002828 1 2 0 0 1 1 3 2 2 1 1 1 1 2 1 2 2 2 3 1 2 2 2 1 3 3 1 4 2 3 52
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo03g00703 Cmo_Chr03 FPKM 9.66264 9.879786 9.488138 9.416395 1.502253 1.216404 1.297513 43.462585 43.579109 45.080372