Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g00705 ATGGGGCTGTTCAGCTCTTTCCACCGTTCTTCTCCCTTCTTCTCCACCTTGATTGTGCTTCTTCTTGTCAAAGGTTTCAAAGAGGTCTCCGGCGCTACATTCACGTTCGTTAACAAGTGTGAATTCACTGTCTGGCCGGGAATTCTCGCCAGTGCTGGCAGCCCCAAACTGGAATCCACCGGTTTCGAGCTCGTACAGGGTAGTTCTCGCTCTTTCCAAGCTCCGACCGCCTGGTCCGGTCGGTTCTGGGGCCGAACTAATTGCAATCTCAACGGCTCCGGCCGTATCATCTGCAACACTGGCGACTGTGGCTCCGGTGAGATTGAGTGTAATGGAGCTGGCGCCACCCCACCGGCCACGTTAGCCGAATTCACACTCGGTTCCGGGTCGCAGGATTTCTACGACGTCAGTCTCGTCGACGGCTATAATTTGCCGATGATAATTGAGGGAACTGGTGGGTCAGGCACGTGCTCGTCGACCGGCTGCATTACGGACCTGAATCAGCTCTGCCCGGCAGAGCTGAAGGCAGAGGGTGGCGGCGCGTGTAAAAGCGCCTGTGAGGCATTTGCCTCGCCGGAATACTGCTGCAGCGGAACGTATAACTCGCCGGCGACTTGCCAGCCGTCAGTATACTCAGAAATGTTCAAATCGGCGTGTCCCAGATCGTATAGCTACGCTTATGATGACGCCACAAGCACATTCACCTGTAATGGGGCTGATTACACCATCACATTTTGCCCTTCTCCTCCGAGTCAGAAATCTTCGAGGGATTCGTCGCCAGTGATACCAGAGCCAACAACAGAGCAGTCGGGATCAGAGCCCGAGACCAAGCCAGGATCAGAATCGGGATTAGGTTCACTACAAGGAGCAACATTAAGTAATTCTTGGCTTGCAGATATGGCCATAGGAGGCTCTTCCATTGCCGGAAAACCAAACATAGCATTTCAATTTGGGTCAAGTATTATATTCTTGGTCGTTCTATCTCTAGGTCTTCTTTTAGAATAA 1005 52.54 MGLFSSFHRSSPFFSTLIVLLLVKGFKEVSGATFTFVNKCEFTVWPGILASAGSPKLESTGFELVQGSSRSFQAPTAWSGRFWGRTNCNLNGSGRIICNTGDCGSGEIECNGAGATPPATLAEFTLGSGSQDFYDVSLVDGYNLPMIIEGTGGSGTCSSTGCITDLNQLCPAELKAEGGGACKSACEAFASPEYCCSGTYNSPATCQPSVYSEMFKSACPRSYSYAYDDATSTFTCNGADYTITFCPSPPSQKSSRDSSPVIPEPTTEQSGSEPETKPGSESGLGSLQGATLSNSWLADMAIGGSSIAGKPNIAFQFGSSIIFLVVLSLGLLLE 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6122594 6124318 - CmoCh03G007050.1 Cmo03g00705 378168

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g00705 334 Pfam Thaumatin family 38 247 IPR001938 -
Cmo03g00705 334 Gene3D Thaumatin 32 247 IPR037176 -
Cmo03g00705 334 SUPERFAMILY Osmotin, thaumatin-like protein 32 248 IPR037176 -
Cmo03g00705 334 PRINTS Pathogenesis-related protein signature 33 45 IPR001938 -
Cmo03g00705 334 PRINTS Pathogenesis-related protein signature 81 92 IPR001938 -
Cmo03g00705 334 PRINTS Pathogenesis-related protein signature 132 148 IPR001938 -
Cmo03g00705 334 PRINTS Pathogenesis-related protein signature 237 246 IPR001938 -
Cmo03g00705 334 MobiDBLite consensus disorder prediction 248 284 - -
Cmo03g00705 334 CDD TLP-PA 33 246 - -
Cmo03g00705 334 ProSiteProfiles Thaumatin family profile. 31 247 IPR001938 -
Cmo03g00705 334 SMART tha2 34 247 IPR001938 -
Cmo03g00705 334 PANTHER OS03G0233200 PROTEIN 22 267 IPR001938 -
Cmo03g00705 334 PANTHER THAUMATIN-LIKE PROTEIN 1 22 267 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g00705 - - - csv:101222295 493.426
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo03g00705 Cmo07g00420 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00705 Cmo-Chr3:6122594 Cmo06g00580 Cmo-Chr6:2844785 4.60E-129 dispersed
Cmo01g02036 Cmo-Chr1:14274908 Cmo03g00705 Cmo-Chr3:6122594 6.20E-97 wgd
Cmo12g00355 Cmo-Chr12:2200133 Cmo03g00705 Cmo-Chr3:6122594 1.21E-101 wgd
Cmo16g01286 Cmo-Chr16:9159750 Cmo03g00705 Cmo-Chr3:6122594 7.89E-78 wgd
Cmo20g00760 Cmo-Chr20:3817606 Cmo03g00705 Cmo-Chr3:6122594 1.84E-136 wgd
Cmo03g00705 Cmo-Chr3:6122594 Cmo05g00314 Cmo-Chr5:1394117 8.06E-105 wgd
Cmo03g00705 Cmo-Chr3:6122594 Cmo07g00418 Cmo-Chr7:1899508 6.83E-157 wgd
Cmo03g00705 Cmo-Chr3:6122594 Cmo09g00095 Cmo-Chr9:456782 1.17E-101 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1121 Blo04g00882 Blo16g00082 . . . . . . . . Cma03g00680 Cma07g00423 . . . . Cpe10g00668 Bhi03g00861 Tan03g2089 Cmetu04g0243 . . . . . . . . . . . . . . Cone9ag1608 Lsi01g00595 . . Cme08g00937 Blo05g00709 . . . . . Bma03g00958 Bma06g00093 Sed05g3598 Cmo03g00705 Cmo07g00420 Cma16g01240 Cma20g00764 . . . . Bhi10g01870 Tan05g1162 Cmetu11g0544 . . . . . . . . . . . Lsi07g01100 Csa06g03333 Chy02g00567 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000476 2 3 3 3 2 4 4 4 4 5 4 4 6 4 4 5 4 4 4 4 4 4 4 4 4 4 3 5 4 3 116
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo03g00705 Cmo_Chr03 FPKM 2.333333 0.0 4.909755 2.957838 3.505918 2.427643 2.004331 5.040627 5.239329 4.757859