Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo03g00709 | ATGGAGCACTGGAAAACGGGGGATTTCTCCTCTCAATCTATTGTAGCAGCAGCTGATTTAGTTCCTTCCTCGTCTCTTCAGCCTCAGCCGCTCTCTTTGTCCTCGAGTCGCCACCATAACAACCAGCTTCCTGAATCCAGGTTAAGAACAGATGCAGAAGTAAAGGATCCAATGGCAGTGAAAAAAACCCAAAAGGCAGATCGTGAAAAATTGAGAAGAGACAGACTGAATGAACATTTTCATGAGCTTGGAAACACATTGGATCCAGTTAGGCCCAAAAATGACAAGGCCACCATCCTAACAGACACCATCCAAACGCTGAAGGAGTTAACTGCCGAAGTCAATAGATTAAAGGCCGACTACGAAGGTCTTTCTGAAGAATCACGTGAGCTAACCCAGGAAAAGAATGAACTTAGAGATGAGAAAGCTTCACTAAAATCAGATATTGAAAATATAAATGCTCAGTATCAGCAAAGACTGAGGGTCATGTTTCCCTGGGCCACAATGGATCCTTCTGAGGTCATGGTGCCCCCATATTCCTACCCAGTTCCTGTATCCGTTTCCGTTCCCCCAGGACCGATTCCCATGCATCCGTCATTGCAGCCCTTCACCTTCTTTGGAAATCAGAATCCCGGTGCTATTCCCAACCCCTGTTCCACATTTGTCCCATATACTGCTGCTGTCCATCCTCCAAATGGTCAGCCCTCTGCCCAATATGCTTCCAATTCACATATATCTAGCAAACAAGACTCCAGAAGTAGGTCATCAGATCAGCACAGGCGCAGTAATGCTGGAAGCTGCGACGAATCGAACGATGTAGCAACAGACCTTGAACTTAAGATGCCTGGATCTTCAACACAACAGGATGCATCCTCTAGAAGTAAGAAAGGTAAGCAGTCTCAGAGGAAAGAAAAAAGTATTACAGATTGTAGTTCGTCGAGTCGGGTTTCTTCATCCAAAGTTCTTCAAGATAGCTCCTCTAACAGCATTGGCGATATCCCGAAACAGAACAACTAA | 1017 | 45.33 | MEHWKTGDFSSQSIVAAADLVPSSSLQPQPLSLSSSRHHNNQLPESRLRTDAEVKDPMAVKKTQKADREKLRRDRLNEHFHELGNTLDPVRPKNDKATILTDTIQTLKELTAEVNRLKADYEGLSEESRELTQEKNELRDEKASLKSDIENINAQYQQRLRVMFPWATMDPSEVMVPPYSYPVPVSVSVPPGPIPMHPSLQPFTFFGNQNPGAIPNPCSTFVPYTAAVHPPNGQPSAQYASNSHISSKQDSRSRSSDQHRRSNAGSCDESNDVATDLELKMPGSSTQQDASSRSKKGKQSQRKEKSITDCSSSSRVSSSKVLQDSSSNSIGDIPKQNN | 338 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 6141152 | 6144495 | + | CmoCh03G007090.1 | Cmo03g00709 | 378172 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo03g00709 | 338 | Pfam | Helix-loop-helix DNA-binding domain | 61 | 110 | IPR011598 | GO:0046983 | |
Cmo03g00709 | 338 | MobiDBLite | consensus disorder prediction | 20 | 41 | - | - | |
Cmo03g00709 | 338 | CDD | bHLH_AtILR3_like | 65 | 139 | - | - | |
Cmo03g00709 | 338 | MobiDBLite | consensus disorder prediction | 229 | 338 | - | - | |
Cmo03g00709 | 338 | MobiDBLite | consensus disorder prediction | 250 | 266 | - | - | |
Cmo03g00709 | 338 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 62 | 129 | IPR036638 | GO:0046983 | |
Cmo03g00709 | 338 | MobiDBLite | consensus disorder prediction | 295 | 309 | - | - | |
Cmo03g00709 | 338 | Gene3D | - | 58 | 162 | IPR036638 | GO:0046983 | |
Cmo03g00709 | 338 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 60 | 110 | IPR011598 | GO:0046983 | |
Cmo03g00709 | 338 | MobiDBLite | consensus disorder prediction | 310 | 338 | - | - | |
Cmo03g00709 | 338 | PANTHER | TRANSCRIPTION FACTOR BHLH11 | 34 | 337 | - | - | |
Cmo03g00709 | 338 | Coils | Coil | 100 | 155 | - | - | |
Cmo03g00709 | 338 | MobiDBLite | consensus disorder prediction | 280 | 294 | - | - | |
Cmo03g00709 | 338 | PANTHER | TRANSCRIPTION FACTOR BHLH121 | 34 | 337 | IPR044579 | GO:0003700|GO:0055072 | |
Cmo03g00709 | 338 | MobiDBLite | consensus disorder prediction | 20 | 52 | - | - | |
Cmo03g00709 | 338 | MobiDBLite | consensus disorder prediction | 231 | 249 | - | - | |
Cmo03g00709 | 338 | SMART | finulus | 66 | 116 | IPR011598 | GO:0046983 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo03g00709 | Cmo07g00424 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo03g00709 | Cmo-Chr3:6141152 | Cmo01g01205 | Cmo-Chr1:9755296 | 2.64E-21 | dispersed | |
Cmo02g00324 | Cmo-Chr2:1676112 | Cmo03g00709 | Cmo-Chr3:6141152 | 2.96E-25 | transposed | |
Cmo03g00709 | Cmo-Chr3:6141152 | Cmo07g00424 | Cmo-Chr7:1922093 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
9401 | PF00010 | HLH | 1.20E-08 | No_clan | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo03g00709 | - | - | cmos:111453878 | 586.26 |