Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g00709 ATGGAGCACTGGAAAACGGGGGATTTCTCCTCTCAATCTATTGTAGCAGCAGCTGATTTAGTTCCTTCCTCGTCTCTTCAGCCTCAGCCGCTCTCTTTGTCCTCGAGTCGCCACCATAACAACCAGCTTCCTGAATCCAGGTTAAGAACAGATGCAGAAGTAAAGGATCCAATGGCAGTGAAAAAAACCCAAAAGGCAGATCGTGAAAAATTGAGAAGAGACAGACTGAATGAACATTTTCATGAGCTTGGAAACACATTGGATCCAGTTAGGCCCAAAAATGACAAGGCCACCATCCTAACAGACACCATCCAAACGCTGAAGGAGTTAACTGCCGAAGTCAATAGATTAAAGGCCGACTACGAAGGTCTTTCTGAAGAATCACGTGAGCTAACCCAGGAAAAGAATGAACTTAGAGATGAGAAAGCTTCACTAAAATCAGATATTGAAAATATAAATGCTCAGTATCAGCAAAGACTGAGGGTCATGTTTCCCTGGGCCACAATGGATCCTTCTGAGGTCATGGTGCCCCCATATTCCTACCCAGTTCCTGTATCCGTTTCCGTTCCCCCAGGACCGATTCCCATGCATCCGTCATTGCAGCCCTTCACCTTCTTTGGAAATCAGAATCCCGGTGCTATTCCCAACCCCTGTTCCACATTTGTCCCATATACTGCTGCTGTCCATCCTCCAAATGGTCAGCCCTCTGCCCAATATGCTTCCAATTCACATATATCTAGCAAACAAGACTCCAGAAGTAGGTCATCAGATCAGCACAGGCGCAGTAATGCTGGAAGCTGCGACGAATCGAACGATGTAGCAACAGACCTTGAACTTAAGATGCCTGGATCTTCAACACAACAGGATGCATCCTCTAGAAGTAAGAAAGGTAAGCAGTCTCAGAGGAAAGAAAAAAGTATTACAGATTGTAGTTCGTCGAGTCGGGTTTCTTCATCCAAAGTTCTTCAAGATAGCTCCTCTAACAGCATTGGCGATATCCCGAAACAGAACAACTAA 1017 45.33 MEHWKTGDFSSQSIVAAADLVPSSSLQPQPLSLSSSRHHNNQLPESRLRTDAEVKDPMAVKKTQKADREKLRRDRLNEHFHELGNTLDPVRPKNDKATILTDTIQTLKELTAEVNRLKADYEGLSEESRELTQEKNELRDEKASLKSDIENINAQYQQRLRVMFPWATMDPSEVMVPPYSYPVPVSVSVPPGPIPMHPSLQPFTFFGNQNPGAIPNPCSTFVPYTAAVHPPNGQPSAQYASNSHISSKQDSRSRSSDQHRRSNAGSCDESNDVATDLELKMPGSSTQQDASSRSKKGKQSQRKEKSITDCSSSSRVSSSKVLQDSSSNSIGDIPKQNN 338
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
3 6141152 6144495 + CmoCh03G007090.1 Cmo03g00709 378172
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g00709 338 Pfam Helix-loop-helix DNA-binding domain 61 110 IPR011598 GO:0046983
Cmo03g00709 338 MobiDBLite consensus disorder prediction 20 41 - -
Cmo03g00709 338 CDD bHLH_AtILR3_like 65 139 - -
Cmo03g00709 338 MobiDBLite consensus disorder prediction 229 338 - -
Cmo03g00709 338 MobiDBLite consensus disorder prediction 250 266 - -
Cmo03g00709 338 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 62 129 IPR036638 GO:0046983
Cmo03g00709 338 MobiDBLite consensus disorder prediction 295 309 - -
Cmo03g00709 338 Gene3D - 58 162 IPR036638 GO:0046983
Cmo03g00709 338 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 60 110 IPR011598 GO:0046983
Cmo03g00709 338 MobiDBLite consensus disorder prediction 310 338 - -
Cmo03g00709 338 PANTHER TRANSCRIPTION FACTOR BHLH11 34 337 - -
Cmo03g00709 338 Coils Coil 100 155 - -
Cmo03g00709 338 MobiDBLite consensus disorder prediction 280 294 - -
Cmo03g00709 338 PANTHER TRANSCRIPTION FACTOR BHLH121 34 337 IPR044579 GO:0003700|GO:0055072
Cmo03g00709 338 MobiDBLite consensus disorder prediction 20 52 - -
Cmo03g00709 338 MobiDBLite consensus disorder prediction 231 249 - -
Cmo03g00709 338 SMART finulus 66 116 IPR011598 GO:0046983
       

Event-related genes


Select Gene_1 Gene_2 Event_name
Cmo03g00709 Cmo07g00424 CST
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00709 Cmo-Chr3:6141152 Cmo01g01205 Cmo-Chr1:9755296 2.64E-21 dispersed
Cmo02g00324 Cmo-Chr2:1676112 Cmo03g00709 Cmo-Chr3:6141152 2.96E-25 transposed
Cmo03g00709 Cmo-Chr3:6141152 Cmo07g00424 Cmo-Chr7:1922093 0 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9401 PF00010 HLH 1.20E-08 No_clan Cmo TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g00709 - - cmos:111453878 586.26