Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g00725 ATGTCGTCGACTGGGGAGGCTGAAGTGAAAGTTCCGGCGGAGGATGCTCCTTCTGTGGAGGTTCCGTCTGCGGAGGAGACGAAGGAGGCCGAGAAGCCGGTGGAGGAGAAGAAATCCAGGACTCCGAGGGAGAAGAAGCCTAGGCAGTCTAAGGTGGCTTCACATCCACCGTACTTTCAGATGATCATGGAAGCAATCACATCGCTCAACGAGAAGAATGGATCGAGTCCGTACGCCATAGCCAAATACATGGAGGAGAAACACAAGGAAGTTCTTCCAGCAAATTTCAGGAAAATCTTGGCGCTACAATTGAAGAATTCGACCGCTAAAGGAAAGTTAAGGAAGATCAAGGCTTCGTATGAGCTATCCGAAGCGGGAAAGAAAGACAAGAAGGCTTCGAAGGTCGCAAAAGCGAATGCAGAGAAGAAAACAAAACAGGCAAGAACTACTAGAGCTACTGCAGGGAAGAGGAAGGACGAGGCCGCAAGTAAGGCGGCGAAGGCGATGAAGAAGGTTGTTGCAAAGAAACCGAAAAGAACTACTCCGGCGAAGCCAAAGCAGCCGAAATCAATTAGGTCCCCTGCTGCTAAGAGGGCTAAGAAAGCGGTTGCGTAA 615 50.24 MSSTGEAEVKVPAEDAPSVEVPSAEETKEAEKPVEEKKSRTPREKKPRQSKVASHPPYFQMIMEAITSLNEKNGSSPYAIAKYMEEKHKEVLPANFRKILALQLKNSTAKGKLRKIKASYELSEAGKKDKKASKVAKANAEKKTKQARTTRATAGKRKDEAASKAAKAMKKVVAKKPKRTTPAKPKQPKSIRSPAAKRAKKAVA 204
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6219312 6220628 + CmoCh03G007250.1 Cmo03g00725 378188

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g00725 204 PANTHER HISTONE H1 3 204 - -
Cmo03g00725 204 MobiDBLite consensus disorder prediction 1 57 - -
Cmo03g00725 204 MobiDBLite consensus disorder prediction 123 166 - -
Cmo03g00725 204 CDD H15 53 134 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cmo03g00725 204 Pfam linker histone H1 and H5 family 55 117 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cmo03g00725 204 SMART h15plus2 52 119 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cmo03g00725 204 MobiDBLite consensus disorder prediction 169 204 - -
Cmo03g00725 204 MobiDBLite consensus disorder prediction 21 51 - -
Cmo03g00725 204 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 54 124 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cmo03g00725 204 PANTHER HISTONE H1 3 204 - -
Cmo03g00725 204 Gene3D - 50 143 IPR036388 -
Cmo03g00725 204 PRINTS Histone H5 signature 41 62 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Cmo03g00725 204 PRINTS Histone H5 signature 68 85 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Cmo03g00725 204 PRINTS Histone H5 signature 145 159 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Cmo03g00725 204 PRINTS Histone H5 signature 177 194 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Cmo03g00725 204 MobiDBLite consensus disorder prediction 123 204 - -
Cmo03g00725 204 SUPERFAMILY Winged helix DNA-binding domain 53 133 IPR036390 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g00725 K11275 H1_5; histone H1/5 - csv:101205007 263.848
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00725 Cmo-Chr3:6219312 Cmo05g01236 Cmo-Chr5:9639902 8.93E-18 dispersed
Cmo03g00725 Cmo-Chr3:6219312 Cmo12g01151 Cmo-Chr12:10432726 3.10E-19 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1091 Blo04g00891 . . . . . . . . . Cma03g00698 . Car03g00642 . Sed08g1603 . Cpe10g00652 Bhi03g00883 Tan03g2056 Cmetu04g0515 . Hepe04g1578 . . Cla01g01965 Cam01g2057 Cec04g1715 Cco04g1780 Clacu01g2078 Cmu01g1955 Cre04g1629 Cone8ag0839 Cone12ag0726 . . Lsi01g00617 . . Cme08g00912 . . . . . . Bma03g00967 . . Cmo03g00725 . . . . . . . . . . . . . . . . . . . . . . Csa06g03310 Chy02g00587 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012514 0 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo03g00725 Cmo_Chr03 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0