Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g00727 ATGGAGCTTCCTCTGTTATTCTTGGCGCTGCTGCTCCTCTGCGGTGGTCTTTTTTCCTCCTCTGCCGACACTAGCCCCCGAAGTTTGCCGGAGATTCAGGCATTGATGTCCTTTAAACTTAATTTACATGACCCTCTTGGTGCATTGACTGCTTGGGATTCTTCCACCCCATTGGCGCCCTGTGACTGGCGGGGTATTGTTTGTACCAACAATCGAGTCACTGAACTCCGTTTGCCTCGTCTTCAACTCTCTGGTCGATTGACCGATCAGTTGCCCAACTTGCCCATGTTGCGGAAGCTGAGTATCCGTTCCAATTTCTTCAATGGTACGATTCCGTCTTCTTTGTCCAAATGTCTGTTTCTGCGTTCCGTTTTCTTGCAGTACAATTCCTTTTCCGGTGGCATTCCGGCGGAGTTTGGGAATATGAGTAATCTCCGTATTCTCAACGTGGCGGAGAATCACCTCTCCGGTGTCATCCCCGGCGACCTTCCGAGTAGCCTTAGGTATCTCGATCTTTCGTCGAACGCATTTTCCGGTCAGATTCCAAGGAGCATTATGAACATGACGCAGCTTCAAGTCGTTAATCTCTCTTTCAACATGTTCGGCGGGGAGATTCCGGCGAGCTTTGGTGAGCTTCAAGAGCTTAAACATCTCTGGCTCGACCACAATGTTTTAGAAGGGACGTTGCCTTCGGCTCTTGCGAATTGTTTTTCGCTCGTTCATTTGAGCGTTGAAGGGAATGCACTCCAAGGCGTAATCCCCGCCGCCATTGGAGCTCTTCCGAATCTTCAAGTTATTTCACTCTCGCATAATAGTCTCTCTGGCTCAGTTCCTTACTCCATGTTTTGCAATGTCTCGACGCATCCGCCGTCGCTTCGGATCGTTCAACTTGGATTTAATGGGTTCACGGACATTGTCAAATCTCAGACAGCAACGTGTTTTAGTGCTCTACAGGTCCTCGATATCCAACACAATCAGATAAGGGGAGAGTTCCCTTCGTGGTTAACGGGCGTTTCCACTCTGACACTCTTGGATTTTTCCGTCAATCACTTCTCCGGCCAGATTCCGCCTGGGATTGGGAATCTTTCGGGACTGCAAGAGCTCAGATTAGCGAATAACTCGTTTCACGGCGCCATTCCGTCTGAAATCAAGAACTTCGCCTCGATTTCTGTCATTGATTTTGAAAGGAATCGCTTAACCGGAGAGATTCCGCCGTTTTTGGGCTATGTGAGAGATTTGAAACAGTTGTCTCTCGGAGGAAATCGTTTTTCCGGCACTGTTCCGGCCAGTTTGGGAAATCTCTTGGCGCTTGAAATCTTGAATTTAGAGGACAACGGCTTGAACGGAACCATTCCGCTGGAGCTAATGGGGCTTGGGAATTTAACAGCAATGGAACTCGGTGGGAACGAGTTTTCCGGTGAGGTTCCAACCGGCGTTGGGAATCTCAGTCGTCTTGAGATTTTGAATCTCAGTGCCAACAGTCTTTCCGGGATGCTTCCGTCCAGTCTTGGCAATCTCTTCAAATTAACCACTCTGGACTTGAGCAAACAGAATATTTCCGGGGAGTTGCCATTTGAGCTATCTGGTTTGCCTAATTTACAGGTCATTGCATTACAAGAAAACAAGCTATCTGGTAATGTTCCTGAAGGATTCAGTAGCTTAATGGGTTTGCGCTACTTGAATCTAAGCTCAAACAGATTTTCCGGTCAAATCCCTTCAAATTATGGGTTTCTTCGATCACTTGTTTCTCTGTCATTATCAGACAATCACATTTCCGGCTCGATCCCTTCCGAGCTGGGTAACTGCTCTGATCTACAAATTTTGGAGGTCCATTCAAATGCTCTTTCAGGCCATATTCCGGCCGATCTGTCTCGTTTATCTCATCTGTTAGAGCTGGACTTGGGCAGGAATAAATTGATGGGTGAAATCCCAGTGGCGATCTCAAGTTGCTCGTCTTTAGAATCTCTCCATCTGAACTCGAATCATCTTTCGGGTAGCATACCGGAGTCGTTGTCGAAGCTCTCGAACTTAACCTCGCTCGACCTCTCATCCAACAATTTAAGTGGTGTAATCCCTGCTAATCTTAGCTCCATTACCGGATTGGCAAGCTTAAACGTATCGAGTAATGGTCTAGAAGGCGAAATTCCACCCTCTTTAGGCTCTAGATTCAACAGTTCATCTGTGTTTGCTAACAATTCTGATTTATGTGGGAAACCATTGGCTCGGAATTGTAAGGATACAGAGAAAAAGGATAGAATGAAGAGATTGATACTCTTCATTGCAGTGGCCGCCAGTGGAGCTTGCCTCTTGACTTTGTGTTGCTGCTTTTACATTTTCAGCTTGTTGAGATGGCGGAAGAGGCTCAAAGAGAAGGCGTCTGGAGAGAAGAAAACAAGCCCAGCAAGGGTTAGCTCTGCGGCAAGTGGTGGGCGTGGAAGCTCAGAAAATGGAGGGCCAAAGCTTGTAATGTTCAACAACAAGATTACCTTGGCGGAAACAATCGAAGCAACAAGGCAATTCGATGAAGAAAATGTTCTAAGCAGAACCCGTTATGGGTTGGTTTTCAAGGCTTGCTACAATGATGGCATGGTGCTCTCAATCCGCCGCCTCTCAAATGGATCATTGGACGAAAACATGTTCAGAAAAGAAGCTGAATCATTGGGAAAAGTTAGGCACCGCAATCTCACTGTTCTTCGTGGCTACTATGCTGGCCCACCTGATATGCGGCTGTTAGTATATGACTACATGCCTAATGGAAACCTTGCCACTCTCCTTCAGGAAGCATCTCACCAAGATGGTCATGTTCTGAATTGGCCAATGCGGCATCTCATTGCTCTTGGAATCGCCCGTGGCTTAGCCTTTCTCCATTCATCATCCATTATCCATGGAGATGTTAAACCACAAAGTGTTCTATTCGACGCCGATTTCGAAGCTCATTTGTCCGATTTCGGGCTCGATCGATTAACTCTCACGGCCTCTACCGAAGCATCCACATCTACCTTAGTAGGCACATTGGGCTACATTGCCCCGGAGGCAGTGTTGACAGGGGAGGCCACCAAGGAATCTGATGTCTACAGCTTTGGCATTGTGTTACTCGAGATTTTAACAGGGAAGAAACCAGTGATGTTCACAGAAGATGAAGACATTGTGAAGTGGGTAAAAAAGCAATTGCAGAGAGGCCAAATTACTGAGCTTTTAGAACCAGGATTGCTTGAGCTGGATCCGGAGTCATCAGAATGGGAGGAGTTCTTACTAGGTGTAAAAGTTGGATTGCTTTGCACTGCACCCGATCCCCGTGATCGGCCAACCATGTCGGATATCGTTTTCATGCTCGAAGGTTGTCGAGTCGGACCCGATATCCCGTCCTCCGCCGATCCCACCTCCCAACTCTCGCCGCCGAACCCATAA 3408 47.39 MELPLLFLALLLLCGGLFSSSADTSPRSLPEIQALMSFKLNLHDPLGALTAWDSSTPLAPCDWRGIVCTNNRVTELRLPRLQLSGRLTDQLPNLPMLRKLSIRSNFFNGTIPSSLSKCLFLRSVFLQYNSFSGGIPAEFGNMSNLRILNVAENHLSGVIPGDLPSSLRYLDLSSNAFSGQIPRSIMNMTQLQVVNLSFNMFGGEIPASFGELQELKHLWLDHNVLEGTLPSALANCFSLVHLSVEGNALQGVIPAAIGALPNLQVISLSHNSLSGSVPYSMFCNVSTHPPSLRIVQLGFNGFTDIVKSQTATCFSALQVLDIQHNQIRGEFPSWLTGVSTLTLLDFSVNHFSGQIPPGIGNLSGLQELRLANNSFHGAIPSEIKNFASISVIDFERNRLTGEIPPFLGYVRDLKQLSLGGNRFSGTVPASLGNLLALEILNLEDNGLNGTIPLELMGLGNLTAMELGGNEFSGEVPTGVGNLSRLEILNLSANSLSGMLPSSLGNLFKLTTLDLSKQNISGELPFELSGLPNLQVIALQENKLSGNVPEGFSSLMGLRYLNLSSNRFSGQIPSNYGFLRSLVSLSLSDNHISGSIPSELGNCSDLQILEVHSNALSGHIPADLSRLSHLLELDLGRNKLMGEIPVAISSCSSLESLHLNSNHLSGSIPESLSKLSNLTSLDLSSNNLSGVIPANLSSITGLASLNVSSNGLEGEIPPSLGSRFNSSSVFANNSDLCGKPLARNCKDTEKKDRMKRLILFIAVAASGACLLTLCCCFYIFSLLRWRKRLKEKASGEKKTSPARVSSAASGGRGSSENGGPKLVMFNNKITLAETIEATRQFDEENVLSRTRYGLVFKACYNDGMVLSIRRLSNGSLDENMFRKEAESLGKVRHRNLTVLRGYYAGPPDMRLLVYDYMPNGNLATLLQEASHQDGHVLNWPMRHLIALGIARGLAFLHSSSIIHGDVKPQSVLFDADFEAHLSDFGLDRLTLTASTEASTSTLVGTLGYIAPEAVLTGEATKESDVYSFGIVLLEILTGKKPVMFTEDEDIVKWVKKQLQRGQITELLEPGLLELDPESSEWEEFLLGVKVGLLCTAPDPRDRPTMSDIVFMLEGCRVGPDIPSSADPTSQLSPPNP 1135
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6230533 6233940 - CmoCh03G007270.1 Cmo03g00727 378190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g00727 1135 Gene3D Ribonuclease Inhibitor 389 456 IPR032675 -
Cmo03g00727 1135 Pfam Leucine rich repeat 652 711 IPR001611 GO:0005515
Cmo03g00727 1135 Pfam Leucine rich repeat 528 567 IPR001611 GO:0005515
Cmo03g00727 1135 Pfam Protein kinase domain 850 1108 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo03g00727 1135 ProSiteProfiles Protein kinase domain profile. 840 1120 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo03g00727 1135 Gene3D Ribonuclease Inhibitor 457 753 IPR032675 -
Cmo03g00727 1135 SUPERFAMILY Protein kinase-like (PK-like) 819 1121 IPR011009 -
Cmo03g00727 1135 Pfam Leucine rich repeat N-terminal domain 30 68 IPR013210 -
Cmo03g00727 1135 Gene3D Transferase(Phosphotransferase) domain 1 916 1119 - -
Cmo03g00727 1135 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 5 1129 - -
Cmo03g00727 1135 MobiDBLite consensus disorder prediction 798 812 - -
Cmo03g00727 1135 Gene3D Ribonuclease Inhibitor 311 388 IPR032675 -
Cmo03g00727 1135 Gene3D Ribonuclease Inhibitor 30 183 IPR032675 -
Cmo03g00727 1135 MobiDBLite consensus disorder prediction 793 820 - -
Cmo03g00727 1135 SMART LRR_sd22_2 626 658 - -
Cmo03g00727 1135 SMART LRR_sd22_2 578 601 - -
Cmo03g00727 1135 SMART LRR_sd22_2 314 340 - -
Cmo03g00727 1135 SMART LRR_sd22_2 674 703 - -
Cmo03g00727 1135 SMART LRR_sd22_2 260 287 - -
Cmo03g00727 1135 PANTHER INACTIVE LEUCINE-RICH REPEAT RECEPTOR KINASE XIAO-RELATED 5 1129 - -
Cmo03g00727 1135 Gene3D Phosphorylase Kinase; domain 1 813 915 - -
Cmo03g00727 1135 SUPERFAMILY RNI-like 403 735 - -
Cmo03g00727 1135 SUPERFAMILY L domain-like 287 432 - -
Cmo03g00727 1135 Gene3D Ribonuclease Inhibitor 184 310 IPR032675 -
Cmo03g00727 1135 Pfam Leucine Rich Repeat 166 187 IPR001611 GO:0005515
Cmo03g00727 1135 SUPERFAMILY L domain-like 28 306 - -
Cmo03g00727 1135 SMART LRR_typ_2 530 553 IPR003591 -
Cmo03g00727 1135 SMART LRR_typ_2 142 165 IPR003591 -
Cmo03g00727 1135 SMART LRR_typ_2 482 505 IPR003591 -
Cmo03g00727 1135 SMART LRR_typ_2 94 118 IPR003591 -
Cmo03g00727 1135 SMART LRR_typ_2 260 284 IPR003591 -
Cmo03g00727 1135 SMART LRR_typ_2 626 650 IPR003591 -
Cmo03g00727 1135 SMART LRR_typ_2 212 235 IPR003591 -
Cmo03g00727 1135 SMART LRR_typ_2 578 602 IPR003591 -
Cmo03g00727 1135 SMART LRR_typ_2 674 698 IPR003591 -
Cmo03g00727 1135 SMART LRR_typ_2 362 385 IPR003591 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00727 Cmo-Chr3:6230533 Cmo17g00121 Cmo-Chr17:692314 9.77E-170 dispersed
Cmo06g00205 Cmo-Chr6:1113470 Cmo03g00727 Cmo-Chr3:6230533 8.49E-56 dispersed
Cmo07g00171 Cmo-Chr7:907514 Cmo03g00727 Cmo-Chr3:6230533 4.47E-10 dispersed
Cmo13g00517 Cmo-Chr13:6063491 Cmo03g00727 Cmo-Chr3:6230533 1.07E-58 dispersed
Cmo14g00037 Cmo-Chr14:184002 Cmo03g00727 Cmo-Chr3:6230533 2.86E-21 dispersed
Cmo15g00181 Cmo-Chr15:831929 Cmo03g00727 Cmo-Chr3:6230533 4.85E-69 dispersed
Cmo18g00490 Cmo-Chr18:3384322 Cmo03g00727 Cmo-Chr3:6230533 5.54E-58 dispersed
Cmo11g00783 Cmo-Chr11:3859877 Cmo03g00727 Cmo-Chr3:6230533 2.10E-91 transposed
Cmo16g00257 Cmo-Chr16:1142158 Cmo03g00727 Cmo-Chr3:6230533 2.29E-35 transposed
Cmo16g00704 Cmo-Chr16:3504582 Cmo03g00727 Cmo-Chr3:6230533 1.81E-07 wgd
Cmo03g00727 Cmo-Chr3:6230533 Cmo07g00439 Cmo-Chr7:2019370 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74192 PF00069 Pkinase 6.30E-35 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g00727 - - cmax:111478744 2078.52