Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g00728 ATGAGGATACTCTGCGATTCCTGCGAAACTGCTGCAGCAACTTTGTTTTGTGCAGCTGACGAGGCTGCTCTCTGCACAGCCTGCGATGCAAAGGTGCACATGTGCAACAAGCTTGCGAGCCGCCATGTAAGGGTTGGGCTCGCAAATCCAAGCCAAGTTCCTCGCTGTGATATATGTGAGAATGCACCAGCTTTCTTTTGGTGTGAGATAGATGGGAGTTCCTTGTGCTTACAATGCGACGTGATTGTTCATGTGGGAGGTAAAAGAATGCACAAGAGATATCTTCGGCTGAGGCAGAGAGTTGAGTTTCCAGGGGATACACAAAATGATGTGAAGGGCCCAAATGCAAAGCCGATGGAACAGGTTGAGACAGTGAGAGGCCAGAATCAAGAAAGGGGTGAGGAGATTGAGAAGCAGGAAGAAGATTTGAGATTCTCTGGTGTTAAAGGGTATTCAAATGGAGATGGGCATTCCAAGCGGCCTAATAAAGTGATTGATTTGAACATTTAG 510 47.25 MRILCDSCETAAATLFCAADEAALCTACDAKVHMCNKLASRHVRVGLANPSQVPRCDICENAPAFFWCEIDGSSLCLQCDVIVHVGGKRMHKRYLRLRQRVEFPGDTQNDVKGPNAKPMEQVETVRGQNQERGEEIEKQEEDLRFSGVKGYSNGDGHSKRPNKVIDLNI 169
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6238667 6239909 + CmoCh03G007280.1 Cmo03g00728 378191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g00728 169 CDD Bbox1_BBX-like 4 47 - -
Cmo03g00728 169 PANTHER B-BOX ZINC FINGER PROTEIN 19 1 168 - -
Cmo03g00728 169 MobiDBLite consensus disorder prediction 127 145 - -
Cmo03g00728 169 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 168 - -
Cmo03g00728 169 SMART bboxneu5 51 96 IPR000315 GO:0008270
Cmo03g00728 169 SMART bboxneu5 4 47 IPR000315 GO:0008270
Cmo03g00728 169 Pfam B-box zinc finger 4 42 IPR000315 GO:0008270
Cmo03g00728 169 Pfam B-box zinc finger 52 85 IPR000315 GO:0008270
Cmo03g00728 169 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Cmo03g00728 169 Gene3D Classic Zinc Finger 1 93 - -
Cmo03g00728 169 MobiDBLite consensus disorder prediction 105 169 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo03g00728 Cmo04g00794 CCT
Cmo03g00728 Cmo04g00794 ECH
Cmo03g00728 Cmo07g00440 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00728 Cmo-Chr3:6238667 Cmo04g00794 Cmo-Chr4:3978002 7.83E-73 dispersed
Cmo01g02006 Cmo-Chr1:14141132 Cmo03g00728 Cmo-Chr3:6238667 5.17E-21 wgd
Cmo03g00728 Cmo-Chr3:6238667 Cmo07g00440 Cmo-Chr7:2026405 4.42E-78 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9405 PF00643 zf-B_box 1.00E-05 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g00728 - - csv:101206016 288.5