Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g00730 ATGGAGGCTGCGTTGAAGATGGGTCTCATCAACAAACCCAGCCCCAAACTTCATTTGGATGAGCTTCGGTCTGCAAACCCGCAAAGCTCTGCATCCCCCTCCTCCGATTACATTTTTGTAGACCAACTTTTCAACTTTTCAAATGAAGAAGAGGAGGAGGAGGAGGAGGCAGAGGGTGAAGAGAAAAACAACCATTCCTCTGTTTCTGCTCCCCTGCAACTTCAACAACACCGTGAGAGCGACGAAAATTCCAACCACAGCTCCACCAATTCCTCTGGAGATGTCTTTTGGTCTGTTTCTTCAAGAGATTTTGAAGACCTCGAATGGCTTTCCCATCTCGTCGCCGACTCCACCCAAGAAGAATACTCTGCCGCACCACTGAACTGCTCTGTTTTTTTGACAGAGAAACCCAATAGTTACCAAAAGGAACCAACCCACCACGCCCCCACCCATCCGAATTTTGAATCTAATCTCAACACCCCATTTCCCTCAAAGCCAAGAAGCAAGCGAGCAAAAATCCCCGGCCGAGTCTGGTCATTAACGAATTCAATTTCTTCTCCATCGTTATACCCACCACAGGCGAAGAAACCAAAGAAAAACCCAGCAGAGGAAGGTTCCGGCAGGGTGCTGGCGCCGCGGCGGTGTAGCCATTGCGGCGTTCAAAAAACCCCACAGTGGCGAGCTGGTCCGCTGGGGTCCAAGACTCTGTGTAATGCGTGCGGCGTACGGTTCAAATCCGGGCGGCTTTTTCCCGAATATAGACCGGCTTGTAGCCCGACGTTCTCGAGCGAGCTTCATTCAAACCACCACCGTAAAGTACTGGAGATGCGACAGAAAAAGGAAACGGAGACGGCCCACTCCGGTCCAGACCCAACCCCGTAG 882 51.36 MEAALKMGLINKPSPKLHLDELRSANPQSSASPSSDYIFVDQLFNFSNEEEEEEEEAEGEEKNNHSSVSAPLQLQQHRESDENSNHSSTNSSGDVFWSVSSRDFEDLEWLSHLVADSTQEEYSAAPLNCSVFLTEKPNSYQKEPTHHAPTHPNFESNLNTPFPSKPRSKRAKIPGRVWSLTNSISSPSLYPPQAKKPKKNPAEEGSGRVLAPRRCSHCGVQKTPQWRAGPLGSKTLCNACGVRFKSGRLFPEYRPACSPTFSSELHSNHHRKVLEMRQKKETETAHSGPDPTP 293
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6244604 6245485 - CmoCh03G007300.1 Cmo03g00730 378193

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g00730 293 MobiDBLite consensus disorder prediction 265 286 - -
Cmo03g00730 293 PANTHER GATA TRANSCRIPTION FACTOR 185 285 - -
Cmo03g00730 293 PANTHER GATA TRANSCRIPTION FACTOR 30 183 - -
Cmo03g00730 293 MobiDBLite consensus disorder prediction 140 208 - -
Cmo03g00730 293 Pfam GATA zinc finger 215 248 IPR000679 GO:0006355|GO:0043565
Cmo03g00730 293 MobiDBLite consensus disorder prediction 140 164 - -
Cmo03g00730 293 CDD ZnF_GATA 214 262 IPR000679 GO:0006355|GO:0043565
Cmo03g00730 293 PIRSF Txn_fac_GATA_plant 20 290 IPR016679 GO:0003677|GO:0005634|GO:0045893
Cmo03g00730 293 ProSitePatterns GATA-type zinc finger domain. 215 240 IPR000679 GO:0006355|GO:0043565
Cmo03g00730 293 MobiDBLite consensus disorder prediction 64 78 - -
Cmo03g00730 293 PANTHER GATA TRANSCRIPTION FACTOR 30 183 - -
Cmo03g00730 293 PANTHER GATA TRANSCRIPTION FACTOR 185 285 - -
Cmo03g00730 293 SMART GATA_3 209 263 IPR000679 GO:0006355|GO:0043565
Cmo03g00730 293 MobiDBLite consensus disorder prediction 264 293 - -
Cmo03g00730 293 Gene3D - 209 286 IPR013088 GO:0006355|GO:0008270
Cmo03g00730 293 Coils Coil 43 63 - -
Cmo03g00730 293 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 212 272 - -
Cmo03g00730 293 MobiDBLite consensus disorder prediction 23 42 - -
Cmo03g00730 293 MobiDBLite consensus disorder prediction 1 95 - -
Cmo03g00730 293 ProSiteProfiles GATA-type zinc finger domain profile. 209 245 IPR000679 GO:0006355|GO:0043565
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g00730 - - K21630 bhj:120072849 438.343
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00730 Cmo-Chr3:6244604 Cmo09g00615 Cmo-Chr9:3073403 6.88E-40 dispersed
Cmo16g00703 Cmo-Chr16:3498974 Cmo03g00730 Cmo-Chr3:6244604 7.24E-63 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1071 Blo04g00899 Blo16g00063 Bda04g00030 . . Bpe13g00427 . . . . Cma03g00704 . Car03g00646 . Sed07g1682 . Cpe10g00648 Bhi03g00894 Tan03g2048 Cmetu04g1399 . Hepe04g1570 . . Cla01g01957 Cam01g2046 Cec04g1704 Cco04g1769 Clacu01g2068 Cmu01g1945 Cre04g1619 . . . . Lsi01g00626 . Chy07g01272 Cme08g00904 . . Bda11g01846 . . Bpe06g00027 Bma03g00976 . . Cmo03g00730 . . Cma20g00811 . . . . Bhi10g01940 Tan05g1237 . . Hepe08g0974 . . . . . . . . . . Csa06g03299 Chy02g00597 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo05g00609 CCT,CST,ECH 78 342 C2C2-Gata Transcription Factor Family AT5G25830 54.3 1.5e-63 240.7
Cmo16g00703 . 28 305 C2C2-Gata Transcription Factor Family AT5G66320 51.4 2.0e-63 240.4
Cmo03g00730 . 98 281 C2C2-Gata Transcription Factor Family AT5G66320 50.5 7.8e-44 175.3
Cmo09g00615 CCT,ECH 34 289 C2C2-Gata Transcription Factor Family AT4G32890 50.6 1.5e-54 210.7
Cmo06g00835 . 1 489 C2C2-Gata Transcription Factor Family AT4G17570 53.8 8.0e-133 471.5
Cmo16g01159 . 1 515 C2C2-Gata Transcription Factor Family AT4G17570 52.2 1.4e-132 470.7
Cmo19g00407 . 1 492 C2C2-Gata Transcription Factor Family AT4G17570 51.3 3.0e-127 453.0
Cmo02g01613 . 643 1070 C2C2-Gata Transcription Factor Family AT4G17570 51.5 1.1e-110 397.9
Cmo06g00835 . 1 490 C2C2-Gata Transcription Factor Family AT5G47140 50.4 2.2e-113 406.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014154 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 0 1 0 23
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9406 PF00320 GATA 1.40E-16 CL0167 Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo03g00730 Cmo_Chr03 FPKM 67.740593 71.811897 20.938234 21.303659 6.777102 4.923641 6.874109 12.482179 12.933288 13.621804