Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g00730 ATGGAGGCTGCGTTGAAGATGGGTCTCATCAACAAACCCAGCCCCAAACTTCATTTGGATGAGCTTCGGTCTGCAAACCCGCAAAGCTCTGCATCCCCCTCCTCCGATTACATTTTTGTAGACCAACTTTTCAACTTTTCAAATGAAGAAGAGGAGGAGGAGGAGGAGGCAGAGGGTGAAGAGAAAAACAACCATTCCTCTGTTTCTGCTCCCCTGCAACTTCAACAACACCGTGAGAGCGACGAAAATTCCAACCACAGCTCCACCAATTCCTCTGGAGATGTCTTTTGGTCTGTTTCTTCAAGAGATTTTGAAGACCTCGAATGGCTTTCCCATCTCGTCGCCGACTCCACCCAAGAAGAATACTCTGCCGCACCACTGAACTGCTCTGTTTTTTTGACAGAGAAACCCAATAGTTACCAAAAGGAACCAACCCACCACGCCCCCACCCATCCGAATTTTGAATCTAATCTCAACACCCCATTTCCCTCAAAGCCAAGAAGCAAGCGAGCAAAAATCCCCGGCCGAGTCTGGTCATTAACGAATTCAATTTCTTCTCCATCGTTATACCCACCACAGGCGAAGAAACCAAAGAAAAACCCAGCAGAGGAAGGTTCCGGCAGGGTGCTGGCGCCGCGGCGGTGTAGCCATTGCGGCGTTCAAAAAACCCCACAGTGGCGAGCTGGTCCGCTGGGGTCCAAGACTCTGTGTAATGCGTGCGGCGTACGGTTCAAATCCGGGCGGCTTTTTCCCGAATATAGACCGGCTTGTAGCCCGACGTTCTCGAGCGAGCTTCATTCAAACCACCACCGTAAAGTACTGGAGATGCGACAGAAAAAGGAAACGGAGACGGCCCACTCCGGTCCAGACCCAACCCCGTAG 882 51.36 MEAALKMGLINKPSPKLHLDELRSANPQSSASPSSDYIFVDQLFNFSNEEEEEEEEAEGEEKNNHSSVSAPLQLQQHRESDENSNHSSTNSSGDVFWSVSSRDFEDLEWLSHLVADSTQEEYSAAPLNCSVFLTEKPNSYQKEPTHHAPTHPNFESNLNTPFPSKPRSKRAKIPGRVWSLTNSISSPSLYPPQAKKPKKNPAEEGSGRVLAPRRCSHCGVQKTPQWRAGPLGSKTLCNACGVRFKSGRLFPEYRPACSPTFSSELHSNHHRKVLEMRQKKETETAHSGPDPTP 293
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6244604 6245485 - CmoCh03G007300.1 Cmo03g00730 378193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g00730 293 MobiDBLite consensus disorder prediction 265 286 - -
Cmo03g00730 293 PANTHER GATA TRANSCRIPTION FACTOR 185 285 - -
Cmo03g00730 293 PANTHER GATA TRANSCRIPTION FACTOR 30 183 - -
Cmo03g00730 293 MobiDBLite consensus disorder prediction 140 208 - -
Cmo03g00730 293 Pfam GATA zinc finger 215 248 IPR000679 GO:0006355|GO:0043565
Cmo03g00730 293 MobiDBLite consensus disorder prediction 140 164 - -
Cmo03g00730 293 CDD ZnF_GATA 214 262 IPR000679 GO:0006355|GO:0043565
Cmo03g00730 293 PIRSF Txn_fac_GATA_plant 20 290 IPR016679 GO:0003677|GO:0005634|GO:0045893
Cmo03g00730 293 ProSitePatterns GATA-type zinc finger domain. 215 240 IPR000679 GO:0006355|GO:0043565
Cmo03g00730 293 MobiDBLite consensus disorder prediction 64 78 - -
Cmo03g00730 293 PANTHER GATA TRANSCRIPTION FACTOR 30 183 - -
Cmo03g00730 293 PANTHER GATA TRANSCRIPTION FACTOR 185 285 - -
Cmo03g00730 293 SMART GATA_3 209 263 IPR000679 GO:0006355|GO:0043565
Cmo03g00730 293 MobiDBLite consensus disorder prediction 264 293 - -
Cmo03g00730 293 Gene3D - 209 286 IPR013088 GO:0006355|GO:0008270
Cmo03g00730 293 Coils Coil 43 63 - -
Cmo03g00730 293 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 212 272 - -
Cmo03g00730 293 MobiDBLite consensus disorder prediction 23 42 - -
Cmo03g00730 293 MobiDBLite consensus disorder prediction 1 95 - -
Cmo03g00730 293 ProSiteProfiles GATA-type zinc finger domain profile. 209 245 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00730 Cmo-Chr3:6244604 Cmo09g00615 Cmo-Chr9:3073403 6.88E-40 dispersed
Cmo16g00703 Cmo-Chr16:3498974 Cmo03g00730 Cmo-Chr3:6244604 7.24E-63 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9406 PF00320 GATA 1.40E-16 CL0167 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g00730 - K21630 bhj:120072849 438.343