Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g00734 ATGTCTGGCTTCTTCAGTTTAGGTGGAGGAGGAAGAGAAGAGCACCAAGACCATCAAGACCACCAAGAGCACCAACAAAACAACGACACAAACCCGGAGACCTTGTTTTGGTACAAGGGCAACGTGGAGCTATGGCAACAACAACACCACCACCACCAGCACCCTCAACAAGAACAGCCTCTCTTCCAAACCCAATCCCGGACTCCTTACTCCGCCGCACTACCCGTTCGAACCTCCGATGAGTCCTCCTCCAGATCGGGCAATTTCATGATGATTGGGTCAGGATCCGGGGGAGGAGGAATCAGCTGCCAAGACTGTGGCAACCAAGCTAAAAAAGACTGTGTCCATATGCGGTGCAGGACTTGCTGCAAGAGCCGAGGATTCCATTGCGAAACCCATGTGAAAAGCACTTGGGTCCCTGCCGCCAAGCGCCGCGAACGCCAAGAGAAACTCGCCGCCTTACAAACCCAGCATCAACTTCACCTTCATGGCGACAATAATCCCAAACGCCATAGAGATTATAACCCCACTTCCTCCTCTTCTCTCGCCTGCACTCTCATCCCCAACAACACTTCTGGGTTAGAAATTGGGAATTTCCCGGCGGAGTTGAACTCACCAGCAGTATTCCGTTGCGTTCGTGTGAGCTCCACCGACGAATCCGACGATCAATACGCGTATCAAACGGCGGTCAATATCGGAGGACATGTTTTCAAGGGAATTCTATACGATCAAGGACCCGAAACTAATTACATTCCACCAGCTGAGACCTCATCCGGTGGTGGTGGTGGTGGTGGTGGTGGGAGTAGTAGTGGAGTGCAACCATTGAATTTCATCACCGGCGCCACGGATGCGACCACCGCAAGCGGTGGTTCCTCCGCCGCATTACCCTTGCTCGATCCCTCCTCCTTATATTCAACGCCGCTGAATAGCTTCATGGCGGGTACGCAATTCTTCCTACCACCAAGATCTTAA 972 52.57 MSGFFSLGGGGREEHQDHQDHQEHQQNNDTNPETLFWYKGNVELWQQQHHHHQHPQQEQPLFQTQSRTPYSAALPVRTSDESSSRSGNFMMIGSGSGGGGISCQDCGNQAKKDCVHMRCRTCCKSRGFHCETHVKSTWVPAAKRRERQEKLAALQTQHQLHLHGDNNPKRHRDYNPTSSSSLACTLIPNNTSGLEIGNFPAELNSPAVFRCVRVSSTDESDDQYAYQTAVNIGGHVFKGILYDQGPETNYIPPAETSSGGGGGGGGGSSSGVQPLNFITGATDATTASGGSSAALPLLDPSSLYSTPLNSFMAGTQFFLPPRS 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6254612 6256044 + CmoCh03G007340.1 Cmo03g00734 378197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g00734 323 PANTHER PROTEIN SHORT INTERNODES 1 319 - -
Cmo03g00734 323 Pfam Domain of unknown function (DUF702) 100 247 - -
Cmo03g00734 323 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 319 IPR007818 GO:0003700|GO:0006355
Cmo03g00734 323 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 199 246 IPR006511 -
Cmo03g00734 323 MobiDBLite consensus disorder prediction 11 27 - -
Cmo03g00734 323 MobiDBLite consensus disorder prediction 1 33 - -
Cmo03g00734 323 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 102 144 IPR006510 -
Cmo03g00734 323 MobiDBLite consensus disorder prediction 248 276 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo03g00734 Cmo16g00699 CCT
Cmo03g00734 Cmo16g00699 ECH
Cmo03g00734 Cmo07g00450 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00734 Cmo-Chr3:6254612 Cmo19g00311 Cmo-Chr19:2339193 2.78E-67 dispersed
Cmo01g02001 Cmo-Chr1:14124980 Cmo03g00734 Cmo-Chr3:6254612 2.95E-65 wgd
Cmo12g00381 Cmo-Chr12:2364323 Cmo03g00734 Cmo-Chr3:6254612 1.76E-74 wgd
Cmo16g00699 Cmo-Chr16:3464046 Cmo03g00734 Cmo-Chr3:6254612 4.84E-63 wgd
Cmo03g00734 Cmo-Chr3:6254612 Cmo05g00287 Cmo-Chr5:1245268 1.03E-81 wgd
Cmo03g00734 Cmo-Chr3:6254612 Cmo07g00450 Cmo-Chr7:2060308 3.46E-116 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9407 PF05142 DUF702 9.20E-66 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g00734 - - bhj:120072889 480.33