Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo03g00734 | ATGTCTGGCTTCTTCAGTTTAGGTGGAGGAGGAAGAGAAGAGCACCAAGACCATCAAGACCACCAAGAGCACCAACAAAACAACGACACAAACCCGGAGACCTTGTTTTGGTACAAGGGCAACGTGGAGCTATGGCAACAACAACACCACCACCACCAGCACCCTCAACAAGAACAGCCTCTCTTCCAAACCCAATCCCGGACTCCTTACTCCGCCGCACTACCCGTTCGAACCTCCGATGAGTCCTCCTCCAGATCGGGCAATTTCATGATGATTGGGTCAGGATCCGGGGGAGGAGGAATCAGCTGCCAAGACTGTGGCAACCAAGCTAAAAAAGACTGTGTCCATATGCGGTGCAGGACTTGCTGCAAGAGCCGAGGATTCCATTGCGAAACCCATGTGAAAAGCACTTGGGTCCCTGCCGCCAAGCGCCGCGAACGCCAAGAGAAACTCGCCGCCTTACAAACCCAGCATCAACTTCACCTTCATGGCGACAATAATCCCAAACGCCATAGAGATTATAACCCCACTTCCTCCTCTTCTCTCGCCTGCACTCTCATCCCCAACAACACTTCTGGGTTAGAAATTGGGAATTTCCCGGCGGAGTTGAACTCACCAGCAGTATTCCGTTGCGTTCGTGTGAGCTCCACCGACGAATCCGACGATCAATACGCGTATCAAACGGCGGTCAATATCGGAGGACATGTTTTCAAGGGAATTCTATACGATCAAGGACCCGAAACTAATTACATTCCACCAGCTGAGACCTCATCCGGTGGTGGTGGTGGTGGTGGTGGTGGGAGTAGTAGTGGAGTGCAACCATTGAATTTCATCACCGGCGCCACGGATGCGACCACCGCAAGCGGTGGTTCCTCCGCCGCATTACCCTTGCTCGATCCCTCCTCCTTATATTCAACGCCGCTGAATAGCTTCATGGCGGGTACGCAATTCTTCCTACCACCAAGATCTTAA | 972 | 52.57 | MSGFFSLGGGGREEHQDHQDHQEHQQNNDTNPETLFWYKGNVELWQQQHHHHQHPQQEQPLFQTQSRTPYSAALPVRTSDESSSRSGNFMMIGSGSGGGGISCQDCGNQAKKDCVHMRCRTCCKSRGFHCETHVKSTWVPAAKRRERQEKLAALQTQHQLHLHGDNNPKRHRDYNPTSSSSLACTLIPNNTSGLEIGNFPAELNSPAVFRCVRVSSTDESDDQYAYQTAVNIGGHVFKGILYDQGPETNYIPPAETSSGGGGGGGGGSSSGVQPLNFITGATDATTASGGSSAALPLLDPSSLYSTPLNSFMAGTQFFLPPRS | 323 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 6254612 | 6256044 | + | CmoCh03G007340.1 | Cmo03g00734 | 378197 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo03g00734 | 323 | PANTHER | PROTEIN SHORT INTERNODES | 1 | 319 | - | - | |
Cmo03g00734 | 323 | Pfam | Domain of unknown function (DUF702) | 100 | 247 | - | - | |
Cmo03g00734 | 323 | PANTHER | PROTEIN LATERAL ROOT PRIMORDIUM 1 | 1 | 319 | IPR007818 | GO:0003700|GO:0006355 | |
Cmo03g00734 | 323 | TIGRFAM | LRP1_Cterm: LRP1 C-terminal domain | 199 | 246 | IPR006511 | - | |
Cmo03g00734 | 323 | MobiDBLite | consensus disorder prediction | 11 | 27 | - | - | |
Cmo03g00734 | 323 | MobiDBLite | consensus disorder prediction | 1 | 33 | - | - | |
Cmo03g00734 | 323 | TIGRFAM | put_zinc_LRP1: putative zinc finger domain, LRP1 type | 102 | 144 | IPR006510 | - | |
Cmo03g00734 | 323 | MobiDBLite | consensus disorder prediction | 248 | 276 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo03g00734 | Cmo16g00699 | CCT | |
Cmo03g00734 | Cmo16g00699 | ECH | |
Cmo03g00734 | Cmo07g00450 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo03g00734 | Cmo-Chr3:6254612 | Cmo19g00311 | Cmo-Chr19:2339193 | 2.78E-67 | dispersed | |
Cmo01g02001 | Cmo-Chr1:14124980 | Cmo03g00734 | Cmo-Chr3:6254612 | 2.95E-65 | wgd | |
Cmo12g00381 | Cmo-Chr12:2364323 | Cmo03g00734 | Cmo-Chr3:6254612 | 1.76E-74 | wgd | |
Cmo16g00699 | Cmo-Chr16:3464046 | Cmo03g00734 | Cmo-Chr3:6254612 | 4.84E-63 | wgd | |
Cmo03g00734 | Cmo-Chr3:6254612 | Cmo05g00287 | Cmo-Chr5:1245268 | 1.03E-81 | wgd | |
Cmo03g00734 | Cmo-Chr3:6254612 | Cmo07g00450 | Cmo-Chr7:2060308 | 3.46E-116 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
9407 | PF05142 | DUF702 | 9.20E-66 | No_clan | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo03g00734 | - | - | bhj:120072889 | 480.33 |