Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g00756 ATGGAAGTAGCTCAAGTTCTTCACATGAATGGAGGAGTTGGAGATCTTAGCTATGCTACCAATTCCCGGCTTCAGTCGAAGGTGATATCAATGACGATGCCAATTGCTGAGGAAGCCATTGTCAACCTCTATTGCTCCACTTTTCCAACTACTTTAACCATCGCGGATTTGGGCTGTTCTTCTGGACCCAACGCTTTGATGCCAGTGTCCCAACTCATTGAGGCACTCGAAAAGGCTCGTCGGAAGCTCCGCAAGGAATCAATCGAATATCAAGTTTTGTTAAACGACTTACCCGGAAATGACTTCAATACCATCTTCAAATCCCTGCCTAGCTTCCTTGAACGCTTGAAAATGAAGATTGGCCCTGATCTTGGGCCTTGTCGCGTTACTGGGGTGCCTGGCTCTTTCTATGGCAGGCTTTTCCCTACCCATAGCGTCCACTTTATTCATTCTTCCTATAGCCTTCATTGGCTATCTAAGGTTCCTGAAGGGTTGGAGGAGAATAAAAGAAACATTTTTATGGCTGAGACGAGCCCAGAGAGTGTGCTGAAAGCTTATTATGACCAATTCCAAAAGGACTTCTCCTTGTTTCTCAAGTGTCGTGCACAAGAATTGGTGGGTGGGGGTTGCATGATTTTTACACTCCCGGGAAGGAAAAGCCAAAACCCAGCTAGTAGGGAGTGTTCTTACACTTGGGACCTTTTGGCTGTCGCGCTTAACGACATGGTCTCCAAGGGAAAGATAGAAGTGGAGAAATTGGAGAGCTTCAACATACCCAAATACAAGCCTACACCAACAGAAATAGAGATTGAGGTTGCAAAAGAAGGATCCTTTGTGGTGGATGGCATTAGGGTTTGGGACGTTTCCAGCAATCAATTCAGCAACAACGCATTAGACGGTTTCAAGAGTAGCAGCGACAACGTAGCAAAGGGCATAAGGGCTATAGCTGAACCAATTCTTGCAAGCCATTTTGGAGACCAAATTATGGATGAATTGTTCATCAAATACGGTGAGATCATAGCAGACCGTAAGGCAAAAGAGAAACCTAGTCTTGTCAATGTCACTGTTTCCCTCACTAAACCAAAGTGA 1089 45.18 MEVAQVLHMNGGVGDLSYATNSRLQSKVISMTMPIAEEAIVNLYCSTFPTTLTIADLGCSSGPNALMPVSQLIEALEKARRKLRKESIEYQVLLNDLPGNDFNTIFKSLPSFLERLKMKIGPDLGPCRVTGVPGSFYGRLFPTHSVHFIHSSYSLHWLSKVPEGLEENKRNIFMAETSPESVLKAYYDQFQKDFSLFLKCRAQELVGGGCMIFTLPGRKSQNPASRECSYTWDLLAVALNDMVSKGKIEVEKLESFNIPKYKPTPTEIEIEVAKEGSFVVDGIRVWDVSSNQFSNNALDGFKSSSDNVAKGIRAIAEPILASHFGDQIMDELFIKYGEIIADRKAKEKPSLVNVTVSLTKPK 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6340983 6343284 - CmoCh03G007560.1 Cmo03g00756 378219

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g00756 362 Pfam SAM dependent carboxyl methyltransferase 38 360 IPR005299 GO:0008168
Cmo03g00756 362 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 1 360 IPR029063 -
Cmo03g00756 362 Gene3D Vaccinia Virus protein VP39 21 348 IPR029063 -
Cmo03g00756 362 PANTHER SAM DEPENDENT CARBOXYL METHYLTRANSFERASE-RELATED 1 360 - -
Cmo03g00756 362 Gene3D - 6 347 IPR042086 -
Cmo03g00756 362 Coils Coil 69 96 - -
Cmo03g00756 362 PANTHER S-ADENOSYL-L-METHIONINE:CARBOXYL METHYLTRANSFERASE FAMILY PROTEIN 1 360 IPR005299 GO:0008168
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g00756 K21483 SAMT; salicylate 1-O-methyltransferase [EC:2.1.1.274] - csv:101206474 489.96
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo03g00756 Cmo07g00471 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00756 Cmo-Chr3:6340983 Cmo07g00472 Cmo-Chr7:2158014 0 dispersed
Cmo03g00756 Cmo-Chr3:6340983 Cmo03g00757 Cmo-Chr3:6347326 2.54E-144 tandem
Cmo01g01986 Cmo-Chr1:14043622 Cmo03g00756 Cmo-Chr3:6340983 3.49E-106 wgd
Cmo03g00756 Cmo-Chr3:6340983 Cmo07g00471 Cmo-Chr7:2154560 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1021 . . . . . . . . . . Cma03g00729 Cma07g00473 . . . . . . . . . . . . . . . . . . . . . . . Lsi01g00657 . . Cme08g00871 . . . . . Bpe06g00040 . . . Cmo03g00756 Cmo07g00471 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000124 5 1 6 7 2 6 0 6 4 6 7 6 5 9 9 7 6 2 4 7 8 15 10 11 14 4 9 21 9 12 218
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo03g00756 Cmo_Chr03 FPKM 19.867205 20.883926 21.508656 22.073483 9.853909 7.775173 8.765602 12.594649 10.496181 11.635332