Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g00757 ATGGTTGAAATGGTACCCATGAATGGAGGTGTCGGAGACACCAGTTATGCTAATAACTCCTTGTTTCAGCAAAACATAATATCCATCACTTGGCCCATCACCAAGGAAGCCATCACGCAACTCTACTGCGCCAGCTATCCCACGAGCCTAGCCATTGCCGACTTGGGTTGCTCTTCTGGCCCGAATACTCTTGTGTTTCTCTCCAATTTGATACGACAAGTGGAGAAGCTTCGTCACCAACTCCACAAAAGGTCTCCTCTTGAGTATCAAATCTTCTTCAACGACCTTCATACCAACGACTTCAATTCACTTTTCAAATCCCTCCCAAGTTTCCACCAAAATTTGAAGACCCACATCGGAAATCATGATCTTGGTCCATGCTTCTTCACCGGTGTTCCTGGTTCTTTCTATAACAGGCTTTTCCCTCGTGCAACTTTGCACTTTGTTCATTCCTCTTATAGTCTCCATTGGCTAAGCCAGGTTCCGGAAGGGATCGAAAGCAATAAAGGCAACATTTTCATATCGGACACGAGCCCGAACGCAGTACAAGAAGCCTATCGTTGCCAATTTCAAAAGGATTTTTCTACGTTTTTGAAGTGTCGTGCCGAGGAATTGGTGGTTGGTGGGCGCATGGTTCTAACAAGCTCGGCAAGAACATGTGAAGATCGAGTCAACAAGGAGTGCTGCTACGCTTGGGAGTTCTTGAATTTGGCTCTCATCGACATGGTTTCAGAGGGAGTTGTTGAAAAGGAGAAGATGGATTCATTCAACATTCCTGTTTACATGCCGTCTTTGGCAGAAGTGGAAGCTGAGGTCTTAAGAGAAGGGAGGTTCGTGATTGAAAGTCTCCAAATTTCAAGAATCAATTGGAACTTATCAACCAATGAACTCAACGGATCATCAAAAGAGTCAGTTAAGAGTGGGTATAACTTTGCAAAATGCATTCGATCCGTTGCAGAAGGGCTTATTGTTCGTCATTTTGGAGAAGAAATTATAGATACATTATTCAATAGGTATGCAGAAATTATTGCTGATCACATGTCCAAGCAGAATATACACAATATTAACTTCACCGCTTCTCTCACTAGGATAAAATGA 1098 43.17 MVEMVPMNGGVGDTSYANNSLFQQNIISITWPITKEAITQLYCASYPTSLAIADLGCSSGPNTLVFLSNLIRQVEKLRHQLHKRSPLEYQIFFNDLHTNDFNSLFKSLPSFHQNLKTHIGNHDLGPCFFTGVPGSFYNRLFPRATLHFVHSSYSLHWLSQVPEGIESNKGNIFISDTSPNAVQEAYRCQFQKDFSTFLKCRAEELVVGGRMVLTSSARTCEDRVNKECCYAWEFLNLALIDMVSEGVVEKEKMDSFNIPVYMPSLAEVEAEVLREGRFVIESLQISRINWNLSTNELNGSSKESVKSGYNFAKCIRSVAEGLIVRHFGEEIIDTLFNRYAEIIADHMSKQNIHNINFTASLTRIK 365
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6347326 6348929 + CmoCh03G007570.1 Cmo03g00757 378220

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g00757 365 PANTHER SAM DEPENDENT CARBOXYL METHYLTRANSFERASE-RELATED 4 363 - -
Cmo03g00757 365 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 2 363 IPR029063 -
Cmo03g00757 365 Gene3D - 5 350 IPR042086 -
Cmo03g00757 365 PANTHER S-ADENOSYL-L-METHIONINE:CARBOXYL METHYLTRANSFERASE FAMILY PROTEIN 4 363 IPR005299 GO:0008168
Cmo03g00757 365 Pfam SAM dependent carboxyl methyltransferase 36 363 IPR005299 GO:0008168
Cmo03g00757 365 Gene3D Vaccinia Virus protein VP39 19 351 IPR029063 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g00757 K21483 SAMT; salicylate 1-O-methyltransferase [EC:2.1.1.274] - tcc:18610878 434.491
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00757 Cmo-Chr3:6347326 Cmo07g00471 Cmo-Chr7:2154560 5.04E-157 dispersed
Cmo03g00759 Cmo-Chr3:6354933 Cmo03g00757 Cmo-Chr3:6347326 3.34E-35 dispersed
Cmo04g01116 Cmo-Chr4:5692143 Cmo03g00757 Cmo-Chr3:6347326 3.63E-60 dispersed
Cmo03g00756 Cmo-Chr3:6340983 Cmo03g00757 Cmo-Chr3:6347326 2.54E-144 tandem
Cmo03g00757 Cmo-Chr3:6347326 Cmo03g00758 Cmo-Chr3:6350059 1.72E-124 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1020 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme08g00870 . . . . . . . . . Cmo03g00757 . . . . . . . . . . . . . . . . . . . . . . Csa06g03266 Chy02g00624 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000124 5 1 6 7 2 6 0 6 4 6 7 6 5 9 9 7 6 2 4 7 8 15 10 11 14 4 9 21 9 12 218
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo03g00757 Cmo_Chr03 FPKM 64.411407 67.526749 75.542458 73.922142 71.129135 83.463181 70.989014 111.100212 104.815742 92.984711