Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g00761 ATGAATCACCTGATCAATTGGAACTTGTACGACACAGAATTCCACTCATCCTCAACAAGTTCCATAGACAGTGCTCATTTGATTGCCAAAAATGAGAATAAGATAAGGCAGCTTTACTCTATATGCTTATCTTATCTTCACCGAAGCCCCAACCAAGCACTAGAAGCCTACCAAAAGCAACACCAAAAGGATTTTTCAACGTTCTTGAAATGCCGGGGTGAGGAATTGGTGGTTGGTGGGCGCATGGTCCTAATTAGTACAGTGAGAATAAGCGATGATCGAAGAATGAGCGAGGAGCGGTGCTATACTTGGGAGCTCTTAAACTTGGCTCTCAATAGCATGGGAGTTATTGAAGAGGAGAAGGTTAACTCCTTCAATCTTCCAGTGTTAACGCCATCTTTGTCCGAAGTAAAAGGCATAGTGGCAAGTGAAGGAAGCTTTAGCATTGATCGTTTTGAGGTTTCAAAAATTAATTGGAACGTCTTTGATGATTCTTGCAGCAATATTGTTATTAATAAAGAGTGTAATTATGCCAAATGCATTAGATCTGTGGTTGAGTCTCTTTTTGTTCGGCACTTTGGACAAGATATTATTGATGAACTCTTCAATAGATATGAAGAAATTATGAAAGATTACATGTTGAAGGAAGAGATTGGGAATATCAATCTTACCATGTCTCTCACCAACCAAGCTAAAATAAGAGGAGAGGAGTGGCCATCAAAATTTTATAACATTGCAAAGTGCATTAGATCTGTGATGGAACCACTTATGATCCCTCACTTTGGAGAAGCAATTATGGAACAACTATTTGATAGCTACAGAAAAGTTGTGAAGGATGAGATGGCCAACAAAAAGATTGAGTTCATCAATCTCACTATTTCTCTCACTAGGATATAA 897 38.57 MNHLINWNLYDTEFHSSSTSSIDSAHLIAKNENKIRQLYSICLSYLHRSPNQALEAYQKQHQKDFSTFLKCRGEELVVGGRMVLISTVRISDDRRMSEERCYTWELLNLALNSMGVIEEEKVNSFNLPVLTPSLSEVKGIVASEGSFSIDRFEVSKINWNVFDDSCSNIVINKECNYAKCIRSVVESLFVRHFGQDIIDELFNRYEEIMKDYMLKEEIGNINLTMSLTNQAKIRGEEWPSKFYNIAKCIRSVMEPLMIPHFGEAIMEQLFDSYRKVVKDEMANKKIEFINLTISLTRI 298
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6357067 6359697 + CmoCh03G007610.1 Cmo03g00761 378224

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g00761 298 Gene3D Vaccinia Virus protein VP39 57 158 IPR029063 -
Cmo03g00761 298 PANTHER SAM DEPENDENT CARBOXYL METHYLTRANSFERASE-RELATED 47 229 - -
Cmo03g00761 298 PANTHER SAM DEPENDENT CARBOXYL METHYLTRANSFERASE-RELATED 240 297 - -
Cmo03g00761 298 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 45 229 IPR029063 -
Cmo03g00761 298 Pfam SAM dependent carboxyl methyltransferase 46 228 IPR005299 GO:0008168
Cmo03g00761 298 Pfam SAM dependent carboxyl methyltransferase 237 297 IPR005299 GO:0008168
Cmo03g00761 298 Gene3D - 217 284 IPR042086 -
Cmo03g00761 298 Gene3D - 45 216 IPR042086 -
Cmo03g00761 298 PANTHER S-ADENOSYL-L-METHIONINE:CARBOXYL METHYLTRANSFERASE FAMILY PROTEIN 47 229 IPR005299 GO:0008168
Cmo03g00761 298 PANTHER S-ADENOSYL-L-METHIONINE:CARBOXYL METHYLTRANSFERASE FAMILY PROTEIN 240 297 IPR005299 GO:0008168
Cmo03g00761 298 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 238 297 IPR029063 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g00761 K21483 SAMT; salicylate 1-O-methyltransferase [EC:2.1.1.274] - egr:104414705 186.808
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00761 Cmo-Chr3:6357067 Cmo07g00472 Cmo-Chr7:2158014 2.63E-14 dispersed
Cmo03g00758 Cmo-Chr3:6350059 Cmo03g00761 Cmo-Chr3:6357067 1.10E-20 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1017 . . . . . . . . . . . . . . . . . . . . . . . . Cla01g01931 Cam01g2016 Cec04g1674 Cco04g1738 Clacu01g2037 Cmu01g1912 Cre04g1589 . . . . . . . Cme08g00868 . . . . . . . . . Cmo03g00761 . . . . . . . . . . . . . . . . . . . . . . Csa06g03265 Chy02g00627 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0051217 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo03g00761 Cmo_Chr03 FPKM 11.788321 11.810078 13.04127 14.642914 10.329579 10.415505 9.798618 12.104124 12.596178 12.900501