Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g00764 ATGGAGTTGGTTGTCAATTCATATACAGTGTGTTTGCTGGTCATCGGTAAAGAAACCAACCAGATCACCGACCGCCCATGCATCAGAGACAATATTTTGAGAAATTGGTCGGGAGCTTTTTTTATGGGCACTGTGATTCGGCTCCAGTTCTTGGTGCCTGGAAAGTGTCCACAATGTTCATGGCCCTTCTCAGACATCATGATCTTATTCCGTCGGCCTCACATTTGGAGAAATTTTACAGTTTTGGCACTCGCCGGAACGGAGACGAAGGATTATCCTCATCATCTAAATACAAAATTGGAACCTTCAATCGTGAACACCCATTTCGCGAATCAGGTAGATTTGGTCGAAGTTAACAGCGAGTTGAAAAAATTAGTGAGAACCAGTCAGTTGAAAGATGCACGCGACATGTTTGATAAAATGCCTCAAAGGGATGGGGTTTCGTGGACTAATATTATTTCTGGGTATGTCAATGCCTCAGACTCCTCTGAAGCCTTGCTTTTGTTCTCTAAGATGCGGCTTCAGTCTGAGCTCCGAATCGATCCATTTGTGCTTAGTCTTGGTTTTAAGGCTTGTGGGCTCGGTTTGAATTGTTCTTATGGGACAAATTTGCATGGGTTTTCAATCAAAACAGGTCTAGTCAACTCTGTTTTCGTGGGTAGCGCTCTTCTCGACATGTATATGAAAATTGGAGAAGTTGGGAGAAGTTGTGAAGTGTTCGATGAAATGCCAACAAGAAATACTGTGACTTGGACGGCAGTTATAACTGGGCTTGTTCGTGCTGGGTATAACGAGAAAGGGCTGGCTTACTTTTCTGAAATGGGGAGGTCGAAGGTGGAATATGACTCGTATGCATATGCTATAGCATTGAAGGCCAGTGCTGATTCAGGTGCACTGAATCATGGAAGAGCAATTCATACACAGACATTGAAGAAAGGATTCGATGAGAGCTCCTTCGTGGCCAATTCGCTGGCTACCATGTATAACAAATGTGGTAAGCTAGATTATGGTTTGTATATGCTTGGAAAGATGAGGGCTCCCGATGTCGTTTCGTGGACGACAATGGTAACGACCTACGTTCAAATGGGTAAGGAGGAATGCGGGATTCAAGCATTTAGAAGAATGAAGGACAGCAATGTGATTCCAAATGAATATACATTTGCTGCTGTTATCTCTGGTTGTGCCAATCTTGCACGGTTGAAGTGGGGGGAACAGCTACATGCTCATGTTTTACGTGTGGGGTTTGTGAATGCTTTGTCAGTTGCTAATTCTATCATGACCATGTACTCAAAATGTGGGGAGTTAGCTTCAGTTTCAAAGGTATTTTGTTCCATGAATTTTAAAGATGTCATTACTTGGAGCACTATAATTGCTGCATACTCTCAAGTAGGCTATGGCAAAGAAGCTTTCGAGTATCTATCACAGATGAGAAGCGAAGGACCGAAACCAAACGAGTTTGCCCTGGCTAGCGTTCTTAGTGTATGTGGAAGTATGGCGATTCTCGAGCAGGGGAAGCAATTACATGCTCATGTTTTGTCTGTTGGGTTAGAACAAACAGCCATGGTATGTAGTGCTCTCATTATTATGTACGCAAAATGTGGGAGCATCACGGAAGCTTCTAAAATATTTACGGATTCATTGAAAAATGACATTATTTCATGGACAGCTATGATCAGTGGGCATGCGGAACATGGACATAGCCAAGAAGCCATTGAATTGTTTGAAAGTATCCAAAAGGTTGGTTTGAGACCAGACTCGGTGACCTTCATTGGCGTTCTTACTGCGTGTAGCCATGCAGGAATGGTTGACCTTGGTTTCCACTACTTCAACTCAATGAGTAAAGATTATCACATCACTCCTTCAAAAGAACACTATGGATGCATGATCGATCTTCTTTGTCGAGCAGGGCGATTAAACGACGCAGAGAGCTTGATCAGAAGCATGCCATTTCAACGGGACGATGTAGTCTGGTCTACTTTGCTGAGGGCATGTAGAATACATGGCGATGTTGATTGTGGACAACGTGCTGCTGCGGAAGTTCTAAAGTTAAACCCAAATTGTGCTGGGACTCACATAACCTTAGCAAACATCTTTGCGGCCAAAGGAAAGTGGAAGGAAGCAGCAAACATAAGAATGATAATGAAATCAAAGGGGGTGGTTAAGGAGCCAGGATGGTCTTCGATAAAGCTCAAGGATAGCGTTTTCGCATTCGTTGCTGGAGATCGTTCTCCGCCACAAGGAGAAGACATATACAGAATGCTGGAGGAGTTGGCTTTAGGAATGGAAATCTATATTCTTGAATTGAACCATTTAGTTACTGATATGGAAGAATAG 2334 43.14 MELVVNSYTVCLLVIGKETNQITDRPCIRDNILRNWSGAFFMGTVIRLQFLVPGKCPQCSWPFSDIMILFRRPHIWRNFTVLALAGTETKDYPHHLNTKLEPSIVNTHFANQVDLVEVNSELKKLVRTSQLKDARDMFDKMPQRDGVSWTNIISGYVNASDSSEALLLFSKMRLQSELRIDPFVLSLGFKACGLGLNCSYGTNLHGFSIKTGLVNSVFVGSALLDMYMKIGEVGRSCEVFDEMPTRNTVTWTAVITGLVRAGYNEKGLAYFSEMGRSKVEYDSYAYAIALKASADSGALNHGRAIHTQTLKKGFDESSFVANSLATMYNKCGKLDYGLYMLGKMRAPDVVSWTTMVTTYVQMGKEECGIQAFRRMKDSNVIPNEYTFAAVISGCANLARLKWGEQLHAHVLRVGFVNALSVANSIMTMYSKCGELASVSKVFCSMNFKDVITWSTIIAAYSQVGYGKEAFEYLSQMRSEGPKPNEFALASVLSVCGSMAILEQGKQLHAHVLSVGLEQTAMVCSALIIMYAKCGSITEASKIFTDSLKNDIISWTAMISGHAEHGHSQEAIELFESIQKVGLRPDSVTFIGVLTACSHAGMVDLGFHYFNSMSKDYHITPSKEHYGCMIDLLCRAGRLNDAESLIRSMPFQRDDVVWSTLLRACRIHGDVDCGQRAAAEVLKLNPNCAGTHITLANIFAAKGKWKEAANIRMIMKSKGVVKEPGWSSIKLKDSVFAFVAGDRSPPQGEDIYRMLEELALGMEIYILELNHLVTDMEE 777
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6364525 6367262 - CmoCh03G007640.1 Cmo03g00764 378227

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g00764 777 Pfam PPR repeat family 347 396 IPR002885 -
Cmo03g00764 777 Pfam PPR repeat family 550 597 IPR002885 -
Cmo03g00764 777 Pfam PPR repeat family 246 292 IPR002885 -
Cmo03g00764 777 Gene3D Tetratricopeptide repeat domain 593 724 IPR011990 GO:0005515
Cmo03g00764 777 Pfam E motif 667 728 IPR046848 -
Cmo03g00764 777 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 348 382 IPR002885 -
Cmo03g00764 777 PANTHER - 89 451 - -
Cmo03g00764 777 PANTHER - 550 771 - -
Cmo03g00764 777 PANTHER - 447 552 - -
Cmo03g00764 777 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 449 483 IPR002885 -
Cmo03g00764 777 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 550 584 IPR002885 -
Cmo03g00764 777 SUPERFAMILY TPR-like 450 708 IPR011990 GO:0005515
Cmo03g00764 777 TIGRFAM PPR: pentatricopeptide repeat domain 625 648 IPR002885 -
Cmo03g00764 777 TIGRFAM PPR: pentatricopeptide repeat domain 350 384 IPR002885 -
Cmo03g00764 777 TIGRFAM PPR: pentatricopeptide repeat domain 147 174 IPR002885 -
Cmo03g00764 777 TIGRFAM PPR: pentatricopeptide repeat domain 552 586 IPR002885 -
Cmo03g00764 777 TIGRFAM PPR: pentatricopeptide repeat domain 249 282 IPR002885 -
Cmo03g00764 777 TIGRFAM PPR: pentatricopeptide repeat domain 451 485 IPR002885 -
Cmo03g00764 777 Gene3D Tetratricopeptide repeat domain 382 500 IPR011990 GO:0005515
Cmo03g00764 777 Gene3D Tetratricopeptide repeat domain 501 592 IPR011990 GO:0005515
Cmo03g00764 777 Gene3D Tetratricopeptide repeat domain 204 308 IPR011990 GO:0005515
Cmo03g00764 777 Gene3D Tetratricopeptide repeat domain 107 194 IPR011990 GO:0005515
Cmo03g00764 777 Pfam PPR repeat 523 545 IPR002885 -
Cmo03g00764 777 Pfam PPR repeat 451 480 IPR002885 -
Cmo03g00764 777 Pfam PPR repeat 147 173 IPR002885 -
Cmo03g00764 777 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 247 281 IPR002885 -
Cmo03g00764 777 PANTHER OS01G0913400 PROTEIN-RELATED 550 771 - -
Cmo03g00764 777 PANTHER OS01G0913400 PROTEIN-RELATED 447 552 - -
Cmo03g00764 777 Pfam PPR repeat 619 648 IPR002885 -
Cmo03g00764 777 PANTHER OS01G0913400 PROTEIN-RELATED 89 451 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g00764 - - - cmax:111478417 1447.18
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00764 Cmo-Chr3:6364525 Cmo16g00067 Cmo-Chr16:305296 7.61E-46 dispersed
Cmo11g01283 Cmo-Chr11:8518072 Cmo03g00764 Cmo-Chr3:6364525 7.41E-26 dispersed
Cmo03g00764 Cmo-Chr3:6364525 Cmo15g00165 Cmo-Chr15:765710 2.07E-145 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1005 . . . Bda10g00142 . . . . . . Cma03g00734 . Car03g00669 . . . . . . . . . . . . . . . . . . . . . . Lsi01g00663 . . . . . . . . . . . . Cmo03g00764 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009680 1 4 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 0 0 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo03g00764 Cmo_Chr03 FPKM 7.129108 9.83928 8.911192 10.884793 4.01238 2.538221 5.606641 22.59623 21.632378 19.589224