Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g00766 ATGGACAATCTCTCACATTCTCGCCTTCCCAACAGGGGTTCTACCTCGCTTTCTAAGAAAATCTGCAATGGCGGTCATGGCGCCGGGCATTTTGCAGCTCAAACTATCTATGATGACGTTTATGGCGGTCCTCCCAAGTTTGGAGTCTCTGCTTTGTCTCCTCGCTTCGAAGACTACGGTGAGATTTTCGGGAGCTTCCACGCCCTCCGTGCTTCCTCGATTCCGATTCTCGATCTTCCAGCTGTCGATGAATCCGAGGTCTTTTTCGACGCTCGGAGCTCTGCATTTGACTATGCGGAGGTTTTTGGAGGATTCGATGGTCTGGATTTTGCGATTTCTTATGAGGAACTGGTTGGTCCGTCCAGACGCGTTGACGATGCTTCTTCGGACGAAGCTTGGTATAACTACGTTTATTTTCTGCCGGATACTTGTTGGCTCTTGCTTTTGTTCGCTGATTTCTTGGCTGATGTGTTGAAACTTGAAATTGACCTCCTGACCTATAGTCATAATAGTGACGAGTATGAAGTAGAATGCGGCTGTCTTGCTTTTGTCATTCACAGGACTCCAGCAGGAACTGAATCTTTGTCAGATTGTTCGGACCATTCCGGAAATTCTCGTTGTATGTCAAATGGAGACTCTAATCAGTCCTGTGATGGAAGCACTGAGTTTTGCATATCGTACAGCAAGGTTAACAGCGAAAACATTGGACATATATCAAATGGGAAGATACACGCAACCCAGTTGGAGATGCTTCCTGGACACTCATATCTGGTTGATGAAGCAAATCCCTCAACGAAGGGAACAGATGGCGATCCATCACTGCTGACCAATGATGATAACTATCTCAATATAGATTTTGATACAGGAAAGGTGAAGGGAAAACATCCAAGGAACACTAGGCCACCCCCAGTGGACGGTAATGGCTCTGGACCATTATTAGAGGATAACCTTGTTTCTCAAAATGGATATGGTAGAGGTGTTTGTCGTTCTCATGAGGATTTCATAAGCGTATCTGAAATAAGCCTTAGAACTGAGCCCTCTCAAGTGCCACCACCTTCTCGACCACCTCCCAAGTTTGCTACCAAGAAGGGGGACTCCACGAAAATGACTTTGAGTTGTGGGGAAGCTGCTTCTGAAATAATTTCGGATGATCGTACTCTTCCTTTATTTGATGTGGAGGTAGATGCTAGCTCATCTGCAGCCGTCTCTGCTGCAGCTATGAAAGGAGCAATGGAAAAAGCTCTAGCACAGTTACTGAATGCAAAAGATTTGTGGGAGAGGAAAAAGGAAGGGGTCCATGGACGGATGAGACCGGATGCAAAAAGTGATATGAGAGAAAAGGAAGGAAATTTGACAAAGATTCCAAATAGATTCAAGAGTTTGGCCGATGAAAGTGTACAGATTATTGGGGAAATTCATGACAATGGAATGAATTTTCCTGCTAGAGAGGAGAGGCAAAAGGATGTGAGGGCAACTGAAGTTTGTTCAACACACTATGGAGGAGAGGAACTTTTAACAGCTGCTGAAAAGACCGTACCAATTAGAAGTGGGAGTAGATTTCTTGTGTCTGACAACTATGATTGCTGCAGTGAATGGAAAGATGCCACAGGGTTTTTTGAATTGGCCAGAGCAGATATATCCAGAAAGGAATTTGAGTCGATGAACAATGATGCGGTTCCCAACATTGTGGCTGGACAAATTAGAGTAGAGACAATCAATAAAGCATGGGAAAACGATAAAGATCAAGACAAGAGAGGGAAACCATTCCATACATCTCATGTTCTGAATGAGGAGATGAAGAATTTGGAGAATATGGTTCATGGAAAGGAGGAAGATAAGATTAAACTAAAACCAAATAAAAACGAGACTAGGCAAAAAGAGCAGGTGAAATTAAAAATTCATCAAGATGTTTGTGATCTTGAAGCAAATGATAGGAAATTTGGAGTTGCTCAAGAGTTTGTGGAAGTAAAAAGGCAAATATCTGATGCTAGTGAACTAGAGAAACATGAAAAACCTATTGAGTTTAGACAACTGGACACAGGGCTAAAAGTTGAGCAACCTATTTCACCAAGGGATATTGAACAAGAAAAGAAAAAGGTTGTTAAAAGAAAGGAAAATGGAAATATTCTCAAGGAACCTCTCATTGAGAATGAGAAAAGAGAGATGTTCATTGAGGCTTCTGAAAGGGAAAAACTTGAGCAAAAAATGAGAATGTTCCTCGAGCAACAAAAAAATAAGAAAAGACTGGATTTGGTTCTTGAGGATGACAACTTTAAGGAACAGATGATTCGTGAAAGACAACTGGAAGGAGTTCATGAGATGGACGATCATGGGAAAAAGGGAAAAGAGACTGCCAAGGTTGGAGTAAGTGAGAGACCTGAATTAGCTCATGAGAGAGAAGATGACGACAAATGGCCACAAGATTTTCCGTACAGAGAAGTATGTCAAAAAGGAGTTGATGATTCATTTCAGATTTTGAACATTGAAGGCATGCCAAGAGATGCGGGTAAGTGTGAAGTGACTCAGATGTTGGTTAAAGAATTTCAAGATAGTGCACATCTGAAGGGTATAAGCTTGGAGCATGATGAATTAGAGAGATTGGAGGACAGACACAAAGGAAACACAACAATACGATCTCAAGTATATGTGGAAATGAATGATTTGGGGATATCTGCTGCTGCAATAAAAATGAACGATGACAAAAACCACTTACCCACGGGACTAGCATGTTCAACGGGAATGCATGAAAAATTCTCTCATGTAGATGAAGGTGAAGAGACAATGACTGCAGTCTCAGTTAATGAAACTTCGTCCGGAAGTGGTGGAGCTGAAAATCTGGAACTTAAAAAAAATGCTTGTGTGTCGAGTGCTTACCAGGCAGAGGTAGAACATAAGAAAGTTCCAGTTGAAATGGAAGATGCAAATATTCAGCTTTCTTTCAATGAATGGACCAAAAGAACAGTCGAAGAAACAAGCTTTCAACCCAAACTTGGACATACAGAAGCAGAACCAACTAATTCGGAAGATGAACTTTCATCTGAAAAGTCAACAAGCATGGATGAGGGAAAGAATGAAACTGAAGAGTGCGTTGTTAAGATGGAAGATATGAAAACATCTCTTCCTCTGGATAAAAATGATGAGAAAGCAGGCCAAGCTGATGTTTGCATGGAAGAGTTTTTAGGGAGAAAGAAGTTTGTTAACCGAATGGGTTCTGATCCTGAACATCCAGAAAGTAACTTGTTCTGTTGTCTGGAAGATAAAGTGAAGTCCTCTGATCAGGTTGAAGATAAGCGACAGAAAGTGTCAGTTCAGGGGTTCAATGTAAGGGCTAAGAAAGGAAGTGAATTGGAGTCAAGTAGGCCAAATATTTCAGAAAGGACACAAAAGAGCGGGGAATTCATGCGTGAGGTCAATGTAAATCCGGCCACAGAAAGAAAGGAAAAGATCATAAACCAGAGCCATACATCTAAAGGAAAAGAAAGCGAGAGAGCGAGGAGCGAAGCAGAATTTGAAAATGATAGTCTTCAAAAATTGGAAGAAGAGAGGGAAAGGGAGAAAGAGAGAGAAAAGGATAGAATGCCTATTGACAGAATTGCTCTCGAACCATGTGATAGAGTAGGTGCCGAAACTCGTGAAAAGGCAGAAAGGGCTGCTCTGGAGAGGATGACTGCTGAAGCCCGACAAAGAGCATTGACAGAGGCACGCGAAAGATTGGAGAAGGCATGTGCAGAGGCAAGAGAAAATTCATTGGCTGGAAAGGCAACTATGGAGGCAAGGGTAAAGGCAGAGCGTGCAGCTGTAGAAAGAGCAGCTGCAGAGGCCAGGGAACGAGCTGCAGAGAAAGTCATGTCTGACAAGACTTCCTTTGGGGTGCGAGAGAGAATGGAAAGATCTGTTTCTGACAAATTCTCTGCTTCTAACATAAATATTGAAATGAGACAGAAGTCTTCATCCTCCGGTCAGCCCAGCCTTCAATCTCAGAGTTTTGGCTCTTCCATTGCTTCAAGATATGCCTATTACTCAGCTTATGATGAGAGGAAGGAGGGTGTTGATAGTGAATCGCCACAAAGGTGTAAAGCCAGATTAGAGAGGCATCAAAGAACAGCAGAACGTGCAGCTAAAGCTCTGGCAGAAAAAAACATGCGTGATCTTCTTGCACAAAGAGAGCAAGCTGAGAGAAATGTAATACTCTTTACAACATGCGAGAGATTGGCTGACACATTGGATGCTGATGTTAGGAGATGGTCAAGTGGGAAGGAAGGAAAATTGCGCGCCTTGCTTTCTACATTGCAATATATCCTTGGACCTGATAGTGGTTGGCAGCCAATTCCCTTGACGGAAGTTATAACTGCCGCTGCTGTAAAGAAAGCTTACAGGAAAGCCACTCTGTGTGTTCATCCGGACAAATTACAACAAAGAGCCATGTTGAGGGCTTTGAGTACCAGGAGATGCCCTCACAGGTACGAGCGACTCGGGGAGGATCCCACCATTAGCTTGTTGGAAGTGAAGCTGAAGAGGGCAACCAGTTTGCCAACCCGAGTACTCGGTTCTGGATCGGTGAAACCAATATCTGAGACAATTGCTCAAGTGAAACAGAAGCAGTCAAAGAAAGGTAACAACAAAGGGGGACACCCTCTTTTCAGTTTCTTTGCTTTTCGCCGCAAGAGGAAGTCAACAGCGAAGCCTGAATTTGCAAGGTATGTAGAGTATGTGAAGGAAGGAGGAGTATGGGATCTGAAAGCAAATGCTCCTCTGCTTATCGACTCCTCCCCGGTCCTCTGCCTTCGTACTTGTCTCTTGCACCTAGGGTTTTTAACGCCGCCTTCTTCTTCTTCAAAGAGAATCATGCCAACATTCACTACAATTGCGTTGGAAAGGTTGTTAGAACCTGGAACTTCCAGGTCTGTCGATAAGTCCCTTCCTAAACCTAAGCCTTCTCTGAACTCCGACCGTGCTCCAAGCACGAAGTTGGAGAGGAGAAATAGCCCATCAGTTGCTGACAGAAAAATTCAGCGGCCTCAAATAAAGCCAGCACTATATGCCACTCCAGAGGCAACTCCTCTTCCGGATTCACCATCTTCATTCCCTCCTTCCCCTTATATTGTCAATCACAAGCGGCGTGGACCTCGTCTCTTGAAGAGTTTCTCTGAGGACGACGTCTCTTCTCGCAAAAAGATGAATGATAAGGATATAGGAAATGGGAATGTGAAGGGTACAGATAGCAATGATGTAAAATTGACTGAGGGTGCTTCTGTTGTTGTTGACATGCCTATTCCAGATGGGCACAGAAATGGTCTAGATTGCGCTAGTAGTAGTCATGTTGGTCAAAATGGGAGTGTTGATGATGATCATGGTGCTGCAGGTGTCCAACTTGCGAGCAATCACAGTAATCATGGAATGAGTAATGGTGTTACTCGGGAAAAGGATTCATTGAAAGTCGTTGTGTCAAATTCAGGAGGTGTGGGGGATACTGAAGACTTCTTTGACCCACAGGATTCCTTGAGTGTTACAAGTAACACAGATGGAGAGGATAATGGTATTGAACGTTCAGCTAAAATCGGTACTCCTGTGGGGGAGTTTTATGATGCTTTGGAAGCGCTTTCTTCTGAGGGTTTGCCACAACCTTGTATTTCTGATATTGAAGCTGAGTTATGTGAAATGAAATTAACACTATCGATGGAGCTGGAGAAGCGAAAGCAGGCCGAGGAAATACTGGATAAATTCCGGGGCCAGTGGCAGAGGCTTAGAGAGCTGCTATTGCTTGTAGGATTGACCCTTCCTTCAGATCCCACAGTAGCCACAGAAGGGAAGCAGTTAGATTCTGACCCTGCTGAAGAATTGTGCCAACAAGTTTATCTTGCTAGGTTTGTGTCAGATTCTATTGGAAGAGGTGTAGCGAGGGCAGAGGTGGAGACTGAGATGGAAGCGCAGCTTGAAGTGAAGAATTTTGAGATTGCTCGATTGCTGGACCGGCTCCATTACTATGAGGCAGCAAATCATGAAATGTCCCAAAGGAATCAAGAAGCTGTAGGTAAGAACCTTGTGAACCTTGGCTGA 6057 43.55 MDNLSHSRLPNRGSTSLSKKICNGGHGAGHFAAQTIYDDVYGGPPKFGVSALSPRFEDYGEIFGSFHALRASSIPILDLPAVDESEVFFDARSSAFDYAEVFGGFDGLDFAISYEELVGPSRRVDDASSDEAWYNYVYFLPDTCWLLLLFADFLADVLKLEIDLLTYSHNSDEYEVECGCLAFVIHRTPAGTESLSDCSDHSGNSRCMSNGDSNQSCDGSTEFCISYSKVNSENIGHISNGKIHATQLEMLPGHSYLVDEANPSTKGTDGDPSLLTNDDNYLNIDFDTGKVKGKHPRNTRPPPVDGNGSGPLLEDNLVSQNGYGRGVCRSHEDFISVSEISLRTEPSQVPPPSRPPPKFATKKGDSTKMTLSCGEAASEIISDDRTLPLFDVEVDASSSAAVSAAAMKGAMEKALAQLLNAKDLWERKKEGVHGRMRPDAKSDMREKEGNLTKIPNRFKSLADESVQIIGEIHDNGMNFPAREERQKDVRATEVCSTHYGGEELLTAAEKTVPIRSGSRFLVSDNYDCCSEWKDATGFFELARADISRKEFESMNNDAVPNIVAGQIRVETINKAWENDKDQDKRGKPFHTSHVLNEEMKNLENMVHGKEEDKIKLKPNKNETRQKEQVKLKIHQDVCDLEANDRKFGVAQEFVEVKRQISDASELEKHEKPIEFRQLDTGLKVEQPISPRDIEQEKKKVVKRKENGNILKEPLIENEKREMFIEASEREKLEQKMRMFLEQQKNKKRLDLVLEDDNFKEQMIRERQLEGVHEMDDHGKKGKETAKVGVSERPELAHEREDDDKWPQDFPYREVCQKGVDDSFQILNIEGMPRDAGKCEVTQMLVKEFQDSAHLKGISLEHDELERLEDRHKGNTTIRSQVYVEMNDLGISAAAIKMNDDKNHLPTGLACSTGMHEKFSHVDEGEETMTAVSVNETSSGSGGAENLELKKNACVSSAYQAEVEHKKVPVEMEDANIQLSFNEWTKRTVEETSFQPKLGHTEAEPTNSEDELSSEKSTSMDEGKNETEECVVKMEDMKTSLPLDKNDEKAGQADVCMEEFLGRKKFVNRMGSDPEHPESNLFCCLEDKVKSSDQVEDKRQKVSVQGFNVRAKKGSELESSRPNISERTQKSGEFMREVNVNPATERKEKIINQSHTSKGKESERARSEAEFENDSLQKLEEEREREKEREKDRMPIDRIALEPCDRVGAETREKAERAALERMTAEARQRALTEARERLEKACAEARENSLAGKATMEARVKAERAAVERAAAEARERAAEKVMSDKTSFGVRERMERSVSDKFSASNINIEMRQKSSSSGQPSLQSQSFGSSIASRYAYYSAYDERKEGVDSESPQRCKARLERHQRTAERAAKALAEKNMRDLLAQREQAERNVILFTTCERLADTLDADVRRWSSGKEGKLRALLSTLQYILGPDSGWQPIPLTEVITAAAVKKAYRKATLCVHPDKLQQRAMLRALSTRRCPHRYERLGEDPTISLLEVKLKRATSLPTRVLGSGSVKPISETIAQVKQKQSKKGNNKGGHPLFSFFAFRRKRKSTAKPEFARYVEYVKEGGVWDLKANAPLLIDSSPVLCLRTCLLHLGFLTPPSSSSKRIMPTFTTIALERLLEPGTSRSVDKSLPKPKPSLNSDRAPSTKLERRNSPSVADRKIQRPQIKPALYATPEATPLPDSPSSFPPSPYIVNHKRRGPRLLKSFSEDDVSSRKKMNDKDIGNGNVKGTDSNDVKLTEGASVVVDMPIPDGHRNGLDCASSSHVGQNGSVDDDHGAAGVQLASNHSNHGMSNGVTREKDSLKVVVSNSGGVGDTEDFFDPQDSLSVTSNTDGEDNGIERSAKIGTPVGEFYDALEALSSEGLPQPCISDIEAELCEMKLTLSMELEKRKQAEEILDKFRGQWQRLRELLLLVGLTLPSDPTVATEGKQLDSDPAEELCQQVYLARFVSDSIGRGVARAEVETEMEAQLEVKNFEIARLLDRLHYYEAANHEMSQRNQEAVGKNLVNLG 2018
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6370723 6381697 - CmoCh03G007660.1 Cmo03g00766 378229

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g00766 2018 MobiDBLite consensus disorder prediction 1710 1731 - -
Cmo03g00766 2018 PANTHER AUXILIN/CYCLIN G-ASSOCIATED KINASE-RELATED 13 1473 - -
Cmo03g00766 2018 Coils Coil 1221 1248 - -
Cmo03g00766 2018 MobiDBLite consensus disorder prediction 773 803 - -
Cmo03g00766 2018 Gene3D DnaJ domain 1365 1486 IPR036869 -
Cmo03g00766 2018 MobiDBLite consensus disorder prediction 1632 1743 - -
Cmo03g00766 2018 SUPERFAMILY Chaperone J-domain 1351 1473 IPR036869 -
Cmo03g00766 2018 MobiDBLite consensus disorder prediction 1002 1026 - -
Cmo03g00766 2018 MobiDBLite consensus disorder prediction 287 314 - -
Cmo03g00766 2018 Coils Coil 1161 1192 - -
Cmo03g00766 2018 Coils Coil 715 749 - -
Cmo03g00766 2018 MobiDBLite consensus disorder prediction 1830 1844 - -
Cmo03g00766 2018 Coils Coil 592 612 - -
Cmo03g00766 2018 MobiDBLite consensus disorder prediction 1790 1804 - -
Cmo03g00766 2018 MobiDBLite consensus disorder prediction 1822 1851 - -
Cmo03g00766 2018 MobiDBLite consensus disorder prediction 1785 1808 - -
Cmo03g00766 2018 MobiDBLite consensus disorder prediction 1301 1327 - -
Cmo03g00766 2018 MobiDBLite consensus disorder prediction 1348 1371 - -
Cmo03g00766 2018 MobiDBLite consensus disorder prediction 1139 1191 - -
Cmo03g00766 2018 Coils Coil 1253 1277 - -
Cmo03g00766 2018 PANTHER AUXILIN, ISOFORM A 13 1473 - -
Cmo03g00766 2018 Coils Coil 1359 1394 - -
Cmo03g00766 2018 MobiDBLite consensus disorder prediction 1300 1327 - -
Cmo03g00766 2018 MobiDBLite consensus disorder prediction 343 366 - -
Cmo03g00766 2018 MobiDBLite consensus disorder prediction 991 1026 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g00766 - - - bhj:120074172 2103.95
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo03g00766 Cmo07g00476 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00766 Cmo-Chr3:6370723 Cmo07g00477 Cmo-Chr7:2171990 0 dispersed
Cmo07g00476 Cmo-Chr7:2171002 Cmo03g00766 Cmo-Chr3:6370723 2.89E-49 transposed
Cmo01g01981 Cmo-Chr1:14021448 Cmo03g00766 Cmo-Chr3:6370723 4.31E-21 wgd
Cmo03g00766 Cmo-Chr3:6370723 Cmo07g00475 Cmo-Chr7:2166193 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1001 . Blo16g00054 . . . Bpe13g00436 . . . . . Cma07g00476 Car03g00672 Car07g00419 Sed14g1133 . . Bhi03g01325 Tan03g2000 Cmetu08g1336 . Hepe04g1527 . . Cla01g01921 Cam01g2007 Cec04g1666 Cco04g1727 Clacu01g2028 Cmu01g1903 Cre04g1578 . . . . . . . Cme08g00861 . . . . . . . . . Cmo03g00766 Cmo07g00476 . . . . . . . . . . . . . . . . . . . . . . Chy02g00632 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004571 1 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 2 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo03g00766 Cmo_Chr03 FPKM 6.465414 4.971038 11.474738 10.864244 4.634033 5.297605 6.787131 7.970626 9.043066 10.124091