Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g00768 ATGGAAGCTCCAGTCAGGGCATTTCGTCCCTGCGTTCTTAATCGCCACCTCTTCACAAAGACAATTCCTCAATCGCGCCTCGTTTCATTTCCTGAATCTAATCGGACCGCGATTTTGCGGCAATCTTCAACCTATTTCCATTTCCCTCCTCGGAAGTGCCTCGGTCTCAAATTTTCACTCTCACTCAATCTTTCTCATTGCTCTTCCTCGTCCTTTGGATCCACTGCATCTTCTATTGGCTCCAGCGCTTTTAATTTTCTTTCTTCTTTACCCTCATTACAATCTTTGGGGTCTCAATTCGCGCCTGATTACTCCAATTCGTTTCTATCTGACTCGAACGGCAGTGCCTGGACTTGGAATCGAGCTTCAGACAGTGCAATTGGAAACAACGTGGGGGCTTTGGGGGGCGAAAAGGGAGAGGCGACTGTTGTGTTGTTAGGTTGGCTTGGGGCAAAGACTAAGCATCTGAGGAGGTACGTGGAGTGGTACAATGCGAGGGGTATCAACGCCTTGACGTTTGTGCTTGATCCGAGAGAGTTTCTTTGGTTCGCGTTGAGTCGAAAAGTTGAGCAGCGGATTTCGGATTTGGCAACTGAACTCATTTCTTGGTTATCAGATGGGGAAGAGAATCATAAGGATCGGCGCCTGATTTTTCACACTTTTAGCAACACGGGCTGGTTTGTATACGGAGCCATTCTTGAAATTTTGCAAGGGCGGGAAGATTTGTTGGAGAAGATTAAAGGGTGCATTGTTGACTCTGGAGGAGGGGATCCGTTGAATCCTCAGATTTGGGCAGCTGGGTTTTCTGCAGCCATTCTCAAGAAAAACAGTTCTTCTACATCTCCAATGGTTAGTGGAAAGGAAATAGACAAGAAACCTCTTGTATTGGAAACCTTTGTTCTGTCATCATTGGAGAATTTTTTCTCGGTTGCTTTGAAGTTTCCCGACGTCGACAAGAGGTTGAAGAAGATTGTTTCACTTCTTACAGAGTACCAGCCTTCGTATCCTGAGCTTTATCTGTACAGTTCAGGAGATAAAGTTGTACCCTTCGAGTCAATCGAGCTTCTTATCGAGAAGAGGAAGAAGACAGGAACGAAGAGTCTTTTGCTTCATAGGTTGCACATGGCAGATGGGAGCAGCAGAACCAAATCGGCCAAGATGAACGATTTGATGACGAAATCGTTCTTAAGTTATGTGGAATTGAAGAAACAGGCGCAGAAGGAAGCCGCATGCGGCGGCGGCTTCGACATTGAATCCGGCCGCCAAGAACTCAATCCGACGGAAGAACAGAACCTGTCTCTGTTTTTCGGACAAGTCGACGAAATCAAGACCCAAATGGAAGAGACAACCAATCTCTTGAACGACATTCAAAAACTAAATCAAGAAGCCAAATCAACCCACAACGCGAAAATCCTCCGCGGATTAAGAGACCGAATCGACTCCGATATGGTCTCAATCCTCCGCAGAGCAAAACTCCTTAAAGAAAAATTGGCCTCTCTCGACCAATCCAACGCCGTCAACCGCCTGGTATCCGTCGCATACGGCGAAGGAACCACCGTGGACCGGACAAGATCTTCAATCACCAACGGACTGAGAGTGAAATTGAGAGAAATGATGATGGAATTCCAGTGTTTGAGAGAAAAAGTTGTGGCGGATCACAAGGAGGATTTGAGAAGAAGATATTTTAGTGCAAATGAGGAACAACCCAGTGAAGAACAGATTGAGAAGATTATGTCTGGGAGTCTGAAATTGGATTCGTTTGGAGGGAATTTGAGCGAGGCCGAGTTGAGAGACCGAGTCAGGCACGAGTCAGTGATGGATATACAGAGGAGTTTGAATAAACTTCATCAAGTGTTTTTGGATATGGCGATTCTGGTTGAGAGTGAAGGGGAGAAGATAGAGAACATTGAGGAGAATGTGGCGAAAGCTGGGAAGTTCATCAATGGCGGAACTCGAAGCCTTTACTATGCGAACCAGATGAAGAGGAAGAACAAGAAGTGGGTGTATTGGATTTGGGCCGTCATTTTTGTTATATTGCTTATTTGCATTGTTTCAATGTTGGTCATTTAA 2070 45.6 MEAPVRAFRPCVLNRHLFTKTIPQSRLVSFPESNRTAILRQSSTYFHFPPRKCLGLKFSLSLNLSHCSSSSFGSTASSIGSSAFNFLSSLPSLQSLGSQFAPDYSNSFLSDSNGSAWTWNRASDSAIGNNVGALGGEKGEATVVLLGWLGAKTKHLRRYVEWYNARGINALTFVLDPREFLWFALSRKVEQRISDLATELISWLSDGEENHKDRRLIFHTFSNTGWFVYGAILEILQGREDLLEKIKGCIVDSGGGDPLNPQIWAAGFSAAILKKNSSSTSPMVSGKEIDKKPLVLETFVLSSLENFFSVALKFPDVDKRLKKIVSLLTEYQPSYPELYLYSSGDKVVPFESIELLIEKRKKTGTKSLLLHRLHMADGSSRTKSAKMNDLMTKSFLSYVELKKQAQKEAACGGGFDIESGRQELNPTEEQNLSLFFGQVDEIKTQMEETTNLLNDIQKLNQEAKSTHNAKILRGLRDRIDSDMVSILRRAKLLKEKLASLDQSNAVNRLVSVAYGEGTTVDRTRSSITNGLRVKLREMMMEFQCLREKVVADHKEDLRRRYFSANEEQPSEEQIEKIMSGSLKLDSFGGNLSEAELRDRVRHESVMDIQRSLNKLHQVFLDMAILVESEGEKIENIEENVAKAGKFINGGTRSLYYANQMKRKNKKWVYWIWAVIFVILLICIVSMLVI 689
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6390131 6395127 + CmoCh03G007680.1 Cmo03g00768 378231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g00768 689 Gene3D - 591 689 - -
Cmo03g00768 689 Gene3D - 432 560 - -
Cmo03g00768 689 SUPERFAMILY t-snare proteins 431 650 IPR010989 GO:0016020|GO:0016192
Cmo03g00768 689 Pfam Eukaryotic protein of unknown function (DUF829) 142 366 IPR008547 -
Cmo03g00768 689 CDD SNARE_syntaxin1-like 591 654 - -
Cmo03g00768 689 SMART tSNARE_6 590 657 IPR000727 -
Cmo03g00768 689 SMART SynN_4 427 554 IPR006011 GO:0016020
Cmo03g00768 689 PANTHER SYNTAXIN-112 390 685 - -
Cmo03g00768 689 PANTHER SYNTAXIN 390 685 IPR045242 -
Cmo03g00768 689 CDD SynN 435 582 IPR006011 GO:0016020
Cmo03g00768 689 Pfam Syntaxin 435 630 IPR006011 GO:0016020
Cmo03g00768 689 Coils Coil 439 466 - -
Cmo03g00768 689 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 595 657 IPR000727 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00768 Cmo-Chr3:6390131 Cmo04g02343 Cmo-Chr4:17398870 4.63E-65 dispersed
Cmo03g00768 Cmo-Chr3:6390131 Cmo15g00820 Cmo-Chr15:4110963 2.45E-66 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g00768 K08486 - csv:101222646 579.326