Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g00772 ATGAGTAACATCAAGATCGGATCAAGAGCTGCCGATAGAAGAAGAAAAGATCACACCGTACCCCAGCTCCATTTCTCATTTGCTGCTACTCCGCCATCCACAACCTGCAGCAGATCAATCTCAAGAACATCAGTTCAAGGTGCAATGGACAATAGTATTCCTTTATCGGTAATTCGATACCGAGAATGTCTGAAGAATCACGCAGCAAGTACTGGAGGCTACGTTCTAGACGGCTGCGGCGAGTTCATGCCAAATGGAGAAGATGGAACGCCTGAGGCCTCTAAGTGTGCAGCATGTGAATGCCATCGGAACTTTCACCGAAAAGAGATGAGAGACGAGCCGCTCTCACAGCAAGCTTTACTCGGTGCTTTCTTCATCTCCAACTCGGTCAGAAACAATGGCCATCGCAGTGATGGGACGCCAGTTCCACTCTCTCGTCACCATCATTTACCGGCAGTTCCAATTTCTTCGATGATGATGGCATTTGGAGGAGGAAGCAATGGAGCTCCGGATGAGTCTTCCAGTGAGGGCCTGAATATGTATTATCCGTCTGATAATGGAGCCCGGGAGCTGTTCTGTCAGCAGACACAACTGATGAAGAAACGATTCAGGACAAAGTTCACACAGGAACAGAAGGAGAAGATGGTAGAATTTGCTGAAAGGTTGGGGTGGAAGATTCAGAAACATGATGAACTAGAAATGCAGCAGTTCTGCGATGAGGTGGGCGTAAGGAGGCAAGTTTTCAAGGTTTGGATGCACAACAAAAAACAAGCCATGAAGAAGAAACACATGTAA 795 47.17 MSNIKIGSRAADRRRKDHTVPQLHFSFAATPPSTTCSRSISRTSVQGAMDNSIPLSVIRYRECLKNHAASTGGYVLDGCGEFMPNGEDGTPEASKCAACECHRNFHRKEMRDEPLSQQALLGAFFISNSVRNNGHRSDGTPVPLSRHHHLPAVPISSMMMAFGGGSNGAPDESSSEGLNMYYPSDNGARELFCQQTQLMKKRFRTKFTQEQKEKMVEFAERLGWKIQKHDELEMQQFCDEVGVRRQVFKVWMHNKKQAMKKKHM 264
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6406729 6407597 - CmoCh03G007720.1 Cmo03g00772 378235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g00772 264 Pfam ZF-HD protein dimerisation region 58 110 IPR006456 -
Cmo03g00772 264 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 7 30 262 - -
Cmo03g00772 264 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 30 262 - -
Cmo03g00772 264 Gene3D - 189 261 - -
Cmo03g00772 264 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 60 109 IPR006456 -
Cmo03g00772 264 SUPERFAMILY Homeodomain-like 198 261 IPR009057 -
Cmo03g00772 264 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 59 110 IPR006456 -
Cmo03g00772 264 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 200 257 IPR006455 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo03g00772 Cmo04g00894 CCT
Cmo03g00772 Cmo04g00894 ECH
Cmo03g00772 Cmo07g00483 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00772 Cmo-Chr3:6406729 Cmo05g00254 Cmo-Chr5:1089513 4.00E-62 dispersed
Cmo04g02895 Cmo-Chr4:20605577 Cmo03g00772 Cmo-Chr3:6406729 6.35E-51 dispersed
Cmo12g00418 Cmo-Chr12:2570610 Cmo03g00772 Cmo-Chr3:6406729 2.43E-66 wgd
Cmo16g00676 Cmo-Chr16:3347008 Cmo03g00772 Cmo-Chr3:6406729 1.19E-31 wgd
Cmo03g00772 Cmo-Chr3:6406729 Cmo07g00483 Cmo-Chr7:2202787 2.41E-128 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9409 PF04770 ZF-HD_dimer 5.10E-29 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g00772 - - cmos:111453071 454.907