Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g00776 ATGGATTCCAATACGCTTTTGGACCCAATGGAGATGAAGGTCGGAGAACTCTTGAAGGAATTTCAGCTTGACTACTCCCCTGATCTTGTTAAGCTCGTTGAGGACACAGTGTCAACTATAAAAAAGGCAATTAAACTCATTCCAGATGACTTGAAGGTTACTGCGGCCGCAGCTCCGGGTTTTATCAGGGATATTGGCGCAGACAAAGTGGAATTCAAATTTAGGAAGCCAAAATCAATTAAAATCGGTGGTAGTTATGCCTTTCAAGGCATTGCAAAACCTGATGTAAATGTTGATCTTTTAGTTGGCTTGCCAAAGGAGTGTTTCCACGAGAAAGACTACCTCAATTACCGGTACCATGCTAAAAGGTTCCTTTACCTCTGCACAATCAAAAAGTATTTGAACTCATCTTCAATGTTTTCAAAGGTTGAATGGTCCACACTTCAGAATGAGGCTCGAAAACCTGTCTTAATTGTCCATCCAGCTTTGGAAGAGCTGAAGGAAGCTCCTGGATTCTTTGTCAGAATAATTCCAACAATAGCAGCATCCTTTTTTAGCATTTCAAAATTGAATCTCAAACGAAACAACATCCATGCCTTGAACCAAGGGAGCTTACTTGCAGCTACACCTAAGTATAACACTAGCATTTTGGAAGATATGTACTTCGAGGATACCTCAGAAATGGTTAAGAAGCCTTTTCTTGAATCAAAAAGTTTGTTAGAAACTTTAATTCTACTAAAGGTTTGGGCTCGGCAGAGAGCTTCAATATATGTGCATGATTGCTTGAACGGATTTTTAATAGCTGTAATATTATCATACCTCATTACTCAAAATAAAATAAATCATTCAATGACGACAATTCAGATGTTCCGTGTTGCAGTGAAATTTATAGCCTCTTCGAATTTATGGAATCACGGGATCTATTTTAAGCTTGGACCTCTGAGCGCTATTTCAAAGGAGGAAAAGAAGCAATATAAAGATTTATTTCCTGTGGTCATCTGCAATCCGTCTTCCAACTTTAACATTGCATTTCGAATATCACAGTCAGGTTTCGCTGAGCTTCAAGATGAGGCTGCTTTGGCACTTGCATGCTTGGAGAAATGCAGCAACGGTGGATTTGAAGAGGTTTTTATGACCAAAATTGACTTTGCTGTTAAATATGACCATTGCATTAGATTGAATTTGAGGGGACAAGTCGAGTTATATGCATCAGGCTTTTGTATGGATGATGAGTGTTGGAGACTATATGAGCAGAAAGTACATGGGATCTTAAGTCAAGGCCTGACTGATAGAGCAAAATTCATTCGTGTTTCCTGGAGGAACACGGAACCAGGATGCACTATTGAAAATGGATTATCAGTATTTGATACGCAGCCATTGCTTGTTGGAATTTCAATTAGCTCTGTGGAAAAAGCTTTTCGTGTGGTCGATATTGGTCCTAATGCTGATAACAAAGAAGATGCCCTAAAGTTTCGGAGATTTTGGGGTGAAAAGGCTGAGCTAAGGAGATTTAAAGATGGCAGAATTGCAGAAAGCACAGTTTGGGAAACTGATCAATGGACGAGACATCTCATTTTGAAGAGAATTGTGGAATATATTTTTGTTCGGCACCTTTCACCGATGTCAAAAGACCGCATTATGCATGCTGTGGATCAGATTGATTTCTCCCTGCTCCATGGTTCTGGAGATCCAATAACATTTTCTGGAAGTTTGCTTGCGGCTTTTGAAGTTTTATCAAAGCGATTACGTTCCATCGAAGACATTCCTTTGAAGGTGTCTGCCGTACAGCCTTTAGACTCAGCTTTCAGGTATACATCTGTTTATCCTCCTGAACCTCACCCACTAGCAGACGAAAAGACAAGTGATCTGCGAATACAGCAAAAGCTTGCTCCCTCCTGCATTCAGCCACTGGAAGTCATGATTCAGCTGGAAGGCTCTGGGAACTGGCCAACTGATGAGGTAGCAATTGAAAAAACCAAAACAGCCTTCCTTCTTAAAATTGGAGAGAGTCTGCAGAATATTCGGGGGATGACGTGTATTGCTTCTGAAGATTCTGTTAATGTACTTGTCTCTGGTTATGCCTTCCACCTAAAAATTTGGCATGAAAAAGGTCTGAGCTTGGTGAATAAGGAATTTGGAAATGAATTATCAAATCGGATCTCCTCAACAGATAAGCAACTTTTTATTGAAAGTCAGCATTCAAGCATGATTAGTGGATTACAGGCTCGTCACTCAATATATGGACCGGTTGTTAGGTTGGCAAAAAGATGGATAGCCTCACATTTCTTTTCAGCATGCTTGGTAGATGAAGCAGTTGAACTGTTGGTAGCATCAATTTTCCTGAAGCCTCTACCCTTTCATGCACCACTTTCTCGAATCACAGGTTTTTTAAGGTTCCTAAGATTACTGTCGGAATATGACTGGACTTTTTCTCCATTGATTATTGACATAAACAATGATTTGGGTGTGAACGAGGAGAAAGAAATAGCTGATAAATTTAACATGACACGAAAAGATTTGCAAGAAAATCCGCAAAGTGCAAGTCCTGCCATGTTCTTAGCAACAGCTTATGACAAGGCATCCGAGGCTTGGACCCGGTTCTCACCAAAATCATCGGAGTTGAAACGGTTGGTTGCTTATGCTAGAAGCAGCGCAGATTTGTTGAGTAGACTAATTTTACAGCATCAGGTCGACTCTTTTCAGTGGGAGTGCCTTTTCCGAACACCATTGAGCAACTACGACGCTGTTATTCTTCTCCATAGAGATAAATTACCGTACCCACAACGCCTTCTCTTCCCATCTGAACTGAACCGAGGAATTCATGTCGCCAAAGGGAATCCTAGCAAGATCTTCTCTCCATTTTTGTTGCCTAGAAACTTGAAAGCAAGTTCTGAGAACATTAAGGACAAGCTTTTGGTAAATTTTGATCCATTAAGGTGTTATATTGCGGATCTGCAGAAAGAATTCTCCAACACTTTCAACTTATGGTATGACTCTTTGGGAGGCGATGCAATTGGACTAACTTGGGGGCAACAAAGTTCAAAGAAGCGTGGACGTGATGAATCTGTTGAGGAGGAAAAAGAACCAGCTGAAGTGCTAAAATCTGTTGGTGAAACTGGTAAAGGTCTAATGAGGAGTGTCTACCTACTCAAGGCCCCAAGACTCACGACTTAA 3174 40.67 MDSNTLLDPMEMKVGELLKEFQLDYSPDLVKLVEDTVSTIKKAIKLIPDDLKVTAAAAPGFIRDIGADKVEFKFRKPKSIKIGGSYAFQGIAKPDVNVDLLVGLPKECFHEKDYLNYRYHAKRFLYLCTIKKYLNSSSMFSKVEWSTLQNEARKPVLIVHPALEELKEAPGFFVRIIPTIAASFFSISKLNLKRNNIHALNQGSLLAATPKYNTSILEDMYFEDTSEMVKKPFLESKSLLETLILLKVWARQRASIYVHDCLNGFLIAVILSYLITQNKINHSMTTIQMFRVAVKFIASSNLWNHGIYFKLGPLSAISKEEKKQYKDLFPVVICNPSSNFNIAFRISQSGFAELQDEAALALACLEKCSNGGFEEVFMTKIDFAVKYDHCIRLNLRGQVELYASGFCMDDECWRLYEQKVHGILSQGLTDRAKFIRVSWRNTEPGCTIENGLSVFDTQPLLVGISISSVEKAFRVVDIGPNADNKEDALKFRRFWGEKAELRRFKDGRIAESTVWETDQWTRHLILKRIVEYIFVRHLSPMSKDRIMHAVDQIDFSLLHGSGDPITFSGSLLAAFEVLSKRLRSIEDIPLKVSAVQPLDSAFRYTSVYPPEPHPLADEKTSDLRIQQKLAPSCIQPLEVMIQLEGSGNWPTDEVAIEKTKTAFLLKIGESLQNIRGMTCIASEDSVNVLVSGYAFHLKIWHEKGLSLVNKEFGNELSNRISSTDKQLFIESQHSSMISGLQARHSIYGPVVRLAKRWIASHFFSACLVDEAVELLVASIFLKPLPFHAPLSRITGFLRFLRLLSEYDWTFSPLIIDINNDLGVNEEKEIADKFNMTRKDLQENPQSASPAMFLATAYDKASEAWTRFSPKSSELKRLVAYARSSADLLSRLILQHQVDSFQWECLFRTPLSNYDAVILLHRDKLPYPQRLLFPSELNRGIHVAKGNPSKIFSPFLLPRNLKASSENIKDKLLVNFDPLRCYIADLQKEFSNTFNLWYDSLGGDAIGLTWGQQSSKKRGRDESVEEEKEPAEVLKSVGETGKGLMRSVYLLKAPRLTT 1057
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6419865 6429213 + CmoCh03G007760.1 Cmo03g00776 378239

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g00776 1057 Pfam Nrap protein PAP/OAS-like domain 241 380 IPR035367 -
Cmo03g00776 1057 Pfam Nrap protein nucleotidyltransferase domain 4 568 741 IPR035369 -
Cmo03g00776 1057 Coils Coil 823 843 - -
Cmo03g00776 1057 PANTHER NUCLEOLAR RNA-ASSOCIATED PROTEIN 8 1049 IPR005554 -
Cmo03g00776 1057 Pfam Nrap protein domain 1 98 230 IPR035082 -
Cmo03g00776 1057 Pfam Nrap protein PAP/OAS1-like domain 5 744 906 IPR035370 -
Cmo03g00776 1057 Pfam Nrap protein domain 3 384 538 IPR035368 -
Cmo03g00776 1057 Gene3D - 217 383 - -
Cmo03g00776 1057 Pfam Nrap protein domain 6 910 1047 IPR035371 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g00776 K14544 UTP22, NOL6; U3 small nucleolar RNA-associated protein 22 - csv:101219567 1891.7
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g975 . . . . . . . . . . Cma03g00748 . Car03g00683 . . . Cpe10g00614 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo03g00776 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009270 1 3 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 0 1 1 2 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo03g00776 Cmo_Chr03 FPKM 4.283902 3.567897 4.208519 4.489902 27.566412 24.593508 29.46875 7.769707 7.105906 8.145162