Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g00778 ATGTGGAATCGAAGCTTCAGCAGCAATGCAACGCGCGCGGTGTTGAAGGAGAAGAAATGGGATGCGCTCATCGTCGGCGCCGGCCACAACGGTTTGATAGCCGCCGCTTATCTTGCCCGTGGCGGCCTCTCTGTTGCGGTGCTTGAGAGGCGCCATGTGATTGGCGGCGCTGCTGTTACCGAAGAGCTGATTCCAGGGTTTAAATTCTCTCGCTGTAGTTACCTCCTAAGCCTCCTTCGGCCCTCCATCATCAGGGACCTGGAATTGAGGAGACATGGGCTGAAGCTATTGAAACCCATGGCTGCATCTTTTACACCCTGCCTCGATGGTCGTCATCTTCTACTTGGAATGGACGATGAACATGATTACTTGGAGATATCTAAGTTTTCAAAAAGGGATGCAGAGGCGTACCCAAGATTTTGTTGTAAACTTGGTTCGTGGCTGATGAATAGATATGAAAGACAGCTTCATAAGTACTGTAAGTTCATGGATTTTATCTTGGATTCGCGAACTCCTGAAGCATTACATAAGGGTTCATCATTTAATGACCGGTTGAGAGAGAAGGTGCAGAACTCTATTTTCTGGGGTCGTTGTCTCCAGCATGCGCTATCATTAGGACAAAAAGATATGGTGGAGTTGATCGACCTTCTAGTATCACCAACTTCTAAGGTCTTAAATGAGTGGTTTGAGGTAATAATGGACTTCGTTTACTTGGATTTTGAGAAGTTTATCTTGGTTTCGGACGTATTGAAGGCAACACTTGCAGGAGATGCCATCATTGGGACAATGACAAGCATCAATGATTCTGGAAGCGGATATGTCCTACTACATCATGTAATGGGAGAAACTACTCATGGCGACCGTAATATTTGGTCACATGTTGAAGGTGGGATGGGTTCGGTATCCATGGCCATAAGTAATGCTGCCAAAGAAGCTGGAGTTCATATTGCAACAAATGCAGAGGTTTCAGAATTGATGATAGAAGACTCTGGTAGATTAAAGGGGAGGCATCTTCTTATATTCTTATACATCTGCTATATCTTATTAATTAAGGTGTTGCTGGTGGATGGGACACAAGTGCATTCGTCGGTTGTTCTATCAAATGCAACCCCCTATAAAACATTCATGGAAATGGTGCCTCATACTTTTCTTCCAGATGATTTTCTACATGCTATCAAATGTTCCGACTATACCTCAGGAACAACAAAAATAAATGTTGCTGTTGACAAATTGCCGCAGTTCCATTCTTGCAACTTGAATAGTCAAGAGGAGGTGGGTCCTCAGCATACAGCAACTATTCATATTGGTGCTGAAAGAATGGAAGATATTGGCAAAGCTTGCCAAGATGCCTGGAATGGCTTTCCATCTAGACGACCTATTATGGAGATGACAATTCCTTCCTCTCTGGACAAAACTGTATCTCCCCCTGGTATTGTGGTTCATATGCTCCTCCAATCACTCTTCTACCTGTTTAGCTTAAGAACTATCCTTGTTTGTTACCGTTCCTAA 1509 44.0 MWNRSFSSNATRAVLKEKKWDALIVGAGHNGLIAAAYLARGGLSVAVLERRHVIGGAAVTEELIPGFKFSRCSYLLSLLRPSIIRDLELRRHGLKLLKPMAASFTPCLDGRHLLLGMDDEHDYLEISKFSKRDAEAYPRFCCKLGSWLMNRYERQLHKYCKFMDFILDSRTPEALHKGSSFNDRLREKVQNSIFWGRCLQHALSLGQKDMVELIDLLVSPTSKVLNEWFEVIMDFVYLDFEKFILVSDVLKATLAGDAIIGTMTSINDSGSGYVLLHHVMGETTHGDRNIWSHVEGGMGSVSMAISNAAKEAGVHIATNAEVSELMIEDSGRLKGRHLLIFLYICYILLIKVLLVDGTQVHSSVVLSNATPYKTFMEMVPHTFLPDDFLHAIKCSDYTSGTTKINVAVDKLPQFHSCNLNSQEEVGPQHTATIHIGAERMEDIGKACQDAWNGFPSRRPIMEMTIPSSLDKTVSPPGIVVHMLLQSLFYLFSLRTILVCYRS 502
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6432371 6436865 + CmoCh03G007780.1 Cmo03g00778 378241

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g00778 502 SUPERFAMILY FAD/NAD(P)-binding domain 18 396 IPR036188 -
Cmo03g00778 502 Gene3D - 19 121 IPR036188 -
Cmo03g00778 502 PANTHER FAD/NAD(P)-BINDING DOMAIN-CONTAINING PROTEIN-RELATED 1 483 - -
Cmo03g00778 502 Gene3D - 255 412 IPR036188 -
Cmo03g00778 502 Pfam NAD(P)-binding Rossmann-like domain 24 74 - -
Cmo03g00778 502 PANTHER PHYTOENE DEHYDROGENASE 1 483 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g00778 - - - csv:101218783 783.097
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo16g00663 Cmo-Chr16:3287498 Cmo03g00778 Cmo-Chr3:6432371 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g971 . Blo16g00044 Bda04g00049 . . Bpe13g00445 . . . . . . . . . . Cpe10g00612 . . . . . . . Cla01g01906 Cam01g1995 Cec04g1647 Cco04g1710 Clacu01g2015 Cmu01g1887 Cre04g1564 . . Cone6ag1621 Cone9ag1546 . . Chy07g01231 Cme08g00846 Blo05g00796 . . . . Bpe06g00045 . Bma06g00121 . Cmo03g00778 . . . . . . . . . . . . . . Cla07g00797 Cam07g0861 Cec07g0912 Cco07g0897 Clacu07g0835 Cmu07g0839 Cre07g1196 Lsi07g00265 Csa06g03238 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001846 2 2 2 3 2 3 2 4 3 2 2 2 2 2 2 2 3 2 2 3 2 1 3 2 2 2 1 2 4 2 68
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo03g00778 Cmo_Chr03 FPKM 9.365026 11.254115 5.464408 5.465308 9.73056 8.746158 9.714828 4.617114 3.988344 4.905522