Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g00780 ATGATACGTGCGGTGATAGTGATGAATACCCAGGGCAAGCCTCGGTTTGCTAAGTTCTACGATTTTCAGCCCGTCGAGAAGCAGCAGGAGCTCATTCGCAGCGTCCATGGAGTACTTTGCAGTCGAGCTGAGAACCTGAGCAATTTCGTCGAGGCTGAGTCCATCTTCGGTCCGGACTCTCGTCTTGTATACAAACACTTCGCAACCCTTTATTTCGTGTTTGTCTTTAACAGTTCTGAGAATGAGCTTGCCATGCTTGACCTGATCCAAGTTTTTGTAGAAACATTGGACAAGTGCTTCAAAAATGTATGTGAGCTCGACTTAGTGTTCCACTACACCAAGATGCATTCTATTTTGGATGAAATCATTTCTGGTGGTCAAGTGCTAGAGACTAGTTCTGCTGAAGTGGTGAAGGCTGTTGAAGAAATATCCAAGTTAGAAACAGCCTCGAATTCTATCAACTTTGTCTCCAAAACAGTTTCTGGTTGGCGGGGTTGA 498 44.98 MIRAVIVMNTQGKPRFAKFYDFQPVEKQQELIRSVHGVLCSRAENLSNFVEAESIFGPDSRLVYKHFATLYFVFVFNSSENELAMLDLIQVFVETLDKCFKNVCELDLVFHYTKMHSILDEIISGGQVLETSSAEVVKAVEEISKLETASNSINFVSKTVSGWRG 165
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6437453 6440980 - CmoCh03G007800.1 Cmo03g00780 378243

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g00780 165 ProSitePatterns Clathrin adaptor complexes small chain signature. 62 72 IPR000804 GO:0006886|GO:0016192|GO:0030117
Cmo03g00780 165 Gene3D - 1 160 - -
Cmo03g00780 165 SUPERFAMILY SNARE-like 1 145 IPR011012 -
Cmo03g00780 165 PIRSF AP_complex_sigma 1 157 IPR016635 GO:0015031
Cmo03g00780 165 PANTHER AP COMPLEX SUBUNIT SIGMA 1 157 - -
Cmo03g00780 165 PANTHER ADAPTOR COMPLEXES SMALL SUBUNIT FAMILY 1 157 IPR016635 GO:0015031
Cmo03g00780 165 CDD AP3_sigma 1 145 IPR027155 GO:0006896|GO:0030123
Cmo03g00780 165 Pfam Clathrin adaptor complex small chain 1 146 IPR022775 -
Cmo03g00780 165 Coils Coil 129 149 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g00780 K12399 AP3S; AP-3 complex subunit sigma - csv:101212637 302.753
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00780 Cmo-Chr3:6437453 Cmo09g00100 Cmo-Chr9:484626 4.41E-31 dispersed
Cmo03g00780 Cmo-Chr3:6437453 Cmo07g00488 Cmo-Chr7:2219073 4.29E-29 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g969 . . Bda04g00050 . . . . . . . Cma03g00751 Cma07g00490 Car03g00686 . . . Cpe10g00611 . . . . . . . . . . . . . . . . Cone6ag1620 Cone9ag1545 . . . . . . . . . . . . . Cmo03g00780 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009219 1 4 0 1 0 1 1 1 1 0 1 1 2 1 1 1 1 2 1 1 1 1 2 1 1 1 0 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo03g00780 Cmo_Chr03 FPKM 1.378128 1.561191 4.240221 4.391751 40.764889 41.814941 44.213795 2.294496 2.464945 2.786657