Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g00791 ATGCCGGCCGATTTAGATAATTCCTCGTCGGCTTCCGGCGAACCCACTGAATCCTCCCCCGGAAACGTCGCTCCGACTCCCAAACCCGCCGCTAAGAAAAAACGAAATCTCCCCGGAATGCCAGATCCGGATGCGGAAGTTATTGCTCTGTCCCCGAAGACCCTTTTGGCCACAAATCGATTTGTTTGCGAGATTTGTAACAAGGGGTTTCAGAGGGATCAGAATCTGCAGCTTCACCGGCGAGGGCACAATCTTCCATGGAAGCTCCGGCAGAGGACAAGTAAGGAGGTGAAGAAGAAGGTCTATGTTTGCCCTGAGAGTTCTTGTGTTCATCACGATCCCTCTAGAGCTCTGGGTGATCTGACTGGGATTAAGAAGCACTTTTGCAGAAAGCACGGCGAGAAGAAGTGGAAATGCGACAAGTGTTCGAAGAAATACGCCGTTCAGTCTGATTGGAAAGCCCACTCCAAAATTTGTGGAACTAGAGAGTATAAATGCGATTGTGGTACTCTGTTTTCCAGAAGGGACAGCTTCATTACACATAGAGCTTTCTGTGATGCATTGGCAGAGGAAAATGCAAAAGCTCAGCCTCAGTCGTTGGTGGACAAACCGGTTTCTGATTCTCAGAAAGCGGTGGAATCTAGTCCGAAGCCATCTCCGCCGCCGGAACCGTCACCTCCGCCGTCAACTTGTGTTCTGTCTCCTGTCTTGCCGATTCAGAGTCAAGGTAAAATCAACAACTACTCTGCCTCCTCAGTTAGCTTTGTCGTGTTTTGTATTTTGTCCCCAATGAAATGA 798 49.25 MPADLDNSSSASGEPTESSPGNVAPTPKPAAKKKRNLPGMPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSKEVKKKVYVCPESSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTLFSRRDSFITHRAFCDALAEENAKAQPQSLVDKPVSDSQKAVESSPKPSPPPEPSPPPSTCVLSPVLPIQSQGKINNYSASSVSFVVFCILSPMK 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6482721 6483696 + CmoCh03G007910.1 Cmo03g00791 378254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g00791 265 MobiDBLite consensus disorder prediction 199 214 - -
Cmo03g00791 265 ProSiteProfiles Zinc finger C2H2 type domain profile. 61 83 IPR013087 -
Cmo03g00791 265 MobiDBLite consensus disorder prediction 196 231 - -
Cmo03g00791 265 SUPERFAMILY beta-beta-alpha zinc fingers 60 157 IPR036236 -
Cmo03g00791 265 SMART c2h2final6 61 83 IPR013087 -
Cmo03g00791 265 SMART c2h2final6 102 132 IPR013087 -
Cmo03g00791 265 SMART c2h2final6 137 157 IPR013087 -
Cmo03g00791 265 PANTHER ZINC FINGER PROTEIN GAI-ASSOCIATED FACTOR 1 1 225 - -
Cmo03g00791 265 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 225 - -
Cmo03g00791 265 MobiDBLite consensus disorder prediction 1 23 - -
Cmo03g00791 265 MobiDBLite consensus disorder prediction 1 45 - -
Cmo03g00791 265 Pfam Zinc-finger double-stranded RNA-binding 61 83 IPR022755 -
Cmo03g00791 265 MobiDBLite consensus disorder prediction 215 231 - -
Cmo03g00791 265 Gene3D Classic Zinc Finger 115 195 - -
Cmo03g00791 265 Gene3D Classic Zinc Finger 41 112 - -
Cmo03g00791 265 ProSitePatterns Zinc finger C2H2 type domain signature. 63 83 IPR013087 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo03g00791 Cmo16g00708 CCT
Cmo03g00791 Cmo16g00708 ECH
Cmo03g00791 Cmo07g00500 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00791 Cmo-Chr3:6482721 Cmo16g00708 Cmo-Chr16:3529729 1.77E-119 dispersed
Cmo20g00655 Cmo-Chr20:3205336 Cmo03g00791 Cmo-Chr3:6482721 1.07E-110 dispersed
Cmo03g00791 Cmo-Chr3:6482721 Cmo03g00793 Cmo-Chr3:6488562 7.41E-127 proximal
Cmo01g01957 Cmo-Chr1:13912614 Cmo03g00791 Cmo-Chr3:6482721 1.89E-117 wgd
Cmo12g00430 Cmo-Chr12:2652002 Cmo03g00791 Cmo-Chr3:6482721 5.07E-104 wgd
Cmo03g00791 Cmo-Chr3:6482721 Cmo07g00500 Cmo-Chr7:2256698 5.68E-122 wgd
Cmo03g00791 Cmo-Chr3:6482721 Cmo09g00165 Cmo-Chr9:741745 3.76E-112 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9412 PF12171 zf-C2H2_jaz 6.80E-05 CL0361 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g00791 K25869 - csv:101217597 420.239