Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g00792 ATGAAGAAATCCACTGCAATTTCAGGATCGCCATTTTCACTTTCTTTTCTGTTCACTGTCTTCTTCCTTTTCGTTTCTCTACCTTCGAATGCAGATGATAAATGGTGGGAAGGGGCCTGTCCTGTGGTGAAGAGAGCCAATGAGAGAAGATCACTCCTCAAAACAGAGTACGGCGAGATCTCTGCCATTGATTTACACGATGCCTCTCAGTTCGGACCTTATCATCTTCAGTTCATTACAATGGAACCCAACTCCCTGTTTCTTCCTGTTCTTCTTCATGCTGACATGGTGTTGTACATGCACACTGGAAGTGGGAGATTGAATTGGTTTGATGATGATGATTTGAGGGAGGTGGATTTACGGCGGGGAGATATTTTCAGGCTTCAACCAGGCGCCATTTTTTACATTCATAGCAGCTTAGAGACCGAACGTGAAAAGCTTCGGATGTATGCTCTGTTTTCCAGCACAGATGAGGACCCATTTGAGCCGGCCATCGGAGCGTACTCCCGTGTCACCGATCATGTTCGTGGATTCGACAAAGAAGTCCTCTGTAAAGCTTTCATGGTCCCGGAGGAAGTAATTGAGGAAATAATGGATGCGAAAAGGCCGCCGCTGATTGTCCACGCTGCAACCACTTTGAGCAAGAAGCCGACGTCGTCGTTGTCGATGTCGTTGGAATTAGAAGCTCGGTTCTTGAAATCTTTCATAGGGGGAGGCGGGAGTGGGATGGATTTCAACAAGAAGAAGAAGAAGAAGAAAGGGTTGTACAACGTTTTTGAAGCGGACCCGGATTTTGAAAACTGTAATGGATGGAGTTTGACTGTAACTAAGAAAGTCTCCCATCAGTTGAAGGGCTCCAACATTGGCTTCTTCGTAGTCAACCTCACAGCGGGCTCAATGATGGGTCCGCATTGGAATCCAAGGGCGTGGGAGATAGGGATTGTGACGTCGGAGGAGGCAGGGGTGGTTCGGGTGGGGTGTTCGAGCATGACGAACAGTTCAATATGCAAGAAATGGAGTTTTGTAGTAGGTAAAGGTGATGTGTTCGTGGTGCCAAGGTTCCATCCAATGGCGCAGATGTCGTTCAACAATGGGTCGTTTGTTTTTGTTGGATTTAGCACGACGAACAGGAATAACCTGCCACAGTTCTTGGCTGGACGTAGCTCGGTGTTGCAAACTGTGGACAGGGAAGTGTTGGCGTGGTCGTTTGATGTGAATGTGACAACGATTGATCGGTTGTTGGGAGCTAGAGTTGAGTCAGTTATATTGGAGTGTACGTCTTGTGCTGAAGAGGAAGTGAGGAAAATGGTGGAGGAAGCTGAGAGAGAGAGACAAGAGGAGGAGGAGAGGAAGCGGGAGGAGGAGGAGGAGGAGGAGAGGAAGCGGAAGGAGGAGGAGGAGGAGGAGAGGAAGCGGAAGGAGGAGGAGGCAAAGAGAGAGGAAGAGAGGAGGAGGAGAGAGGAGGAAGAAAGGGAGAGAGAAGAGGAGGAGGCAAGAAAAAGGGAGGAGGAGGAACGGGAGAGGGAAGAGGAGGCGGAGAGGGGGCGAAGGGAAGAGGAGGAGGCAAGAAAAAGGGAGGAGGAGGAAGAACGGGAGAGGGAAGAGGAGGAGGCGCGAAGGGAAGAGGAAGAGGCGGTGAGGGGAGAAAGGGAGGCAGAGAGAGAGGCAGAGGAAGCTAGGGAGAGTGAGGAAGCACATCGAAGAGAGAGAGGTAGGAGACGCAGAGAGGCAGAAGAAAGACAGAGAAGACGCAGGGAAGAAGAAGAAGAGCCAACACTAAGAATTCTGAGACAACGAACGTAA 1803 49.97 MKKSTAISGSPFSLSFLFTVFFLFVSLPSNADDKWWEGACPVVKRANERRSLLKTEYGEISAIDLHDASQFGPYHLQFITMEPNSLFLPVLLHADMVLYMHTGSGRLNWFDDDDLREVDLRRGDIFRLQPGAIFYIHSSLETEREKLRMYALFSSTDEDPFEPAIGAYSRVTDHVRGFDKEVLCKAFMVPEEVIEEIMDAKRPPLIVHAATTLSKKPTSSLSMSLELEARFLKSFIGGGGSGMDFNKKKKKKKGLYNVFEADPDFENCNGWSLTVTKKVSHQLKGSNIGFFVVNLTAGSMMGPHWNPRAWEIGIVTSEEAGVVRVGCSSMTNSSICKKWSFVVGKGDVFVVPRFHPMAQMSFNNGSFVFVGFSTTNRNNLPQFLAGRSSVLQTVDREVLAWSFDVNVTTIDRLLGARVESVILECTSCAEEEVRKMVEEAERERQEEEERKREEEEEEERKRKEEEEEERKRKEEEAKREEERRRREEEEREREEEEARKREEEEREREEEAERGRREEEEARKREEEEEREREEEEARREEEEAVRGEREAEREAEEARESEEAHRRERGRRRREAEERQRRRREEEEEPTLRILRQRT 600
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6485047 6487203 - CmoCh03G007920.1 Cmo03g00792 378255

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g00792 600 Gene3D Jelly Rolls 244 427 IPR014710 -
Cmo03g00792 600 CDD cupin_7S_vicilin-like_N 52 226 - -
Cmo03g00792 600 MobiDBLite consensus disorder prediction 442 473 - -
Cmo03g00792 600 MobiDBLite consensus disorder prediction 485 530 - -
Cmo03g00792 600 SMART Cupin_1_3 256 411 IPR006045 -
Cmo03g00792 600 SMART Cupin_1_3 44 195 IPR006045 -
Cmo03g00792 600 SUPERFAMILY RmlC-like cupins 12 417 IPR011051 -
Cmo03g00792 600 MobiDBLite consensus disorder prediction 485 600 - -
Cmo03g00792 600 CDD cupin_7S_vicilin-like_C 263 420 - -
Cmo03g00792 600 PANTHER OS03G0336100 PROTEIN-RELATED 16 468 - -
Cmo03g00792 600 MobiDBLite consensus disorder prediction 538 600 - -
Cmo03g00792 600 Pfam Cupin 256 409 IPR006045 -
Cmo03g00792 600 PANTHER PREPROMP73 16 468 - -
Cmo03g00792 600 Gene3D Jelly Rolls 37 218 IPR014710 -
Cmo03g00792 600 Coils Coil 423 588 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g00792 - - - cpep:111804454 820.461
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00792 Cmo-Chr3:6485047 Cmo14g01765 Cmo-Chr14:13654350 1.60E-16 dispersed
Cmo03g00792 Cmo-Chr3:6485047 Cmo20g00507 Cmo-Chr20:2423378 6.44E-48 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g934 . . Bda04g00062 . . . Bma09g00063 . . . Cma03g00763 . . . Sed14g1100 . Cpe10g00599 Bhi03g01275 Tan03g1963 Cmetu08g1687 . Hepe04g1494 . . . . . . . . . . . . Cone9ag1535 Lsi01g00692 . . Cme08g00830 Blo05g00786 . . . . Bpe06g00052 . . . Cmo03g00792 . . . . . . . . . . . . . . . . . . . . . . Csa06g03224 Chy02g00664 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012868 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo03g00792 Cmo_Chr03 FPKM 16.827734 16.532917 17.803123 19.009924 19.986692 21.023569 20.172075 18.655811 19.731625 16.602543