Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g00793 ATGCCGGCCGATGAGAAGGATTCGTCCATGGCTTCCGGGAAGGCTAGTGTTTCTTCTCCGGGAGCGAAATCTGCCACTAAGAAAAAGCGAAATCTACCCGGAATGCCAGATCCGGAAGCGGAAGTAATTGCTCTGTCTCCGAAGACCCTTTTTGCCACAAATCGTTTTGTTTGTGAGATTTGCAACAAGGGGTTTCAGAGGGATCAGAATCTGCAGCTTCACCGGCGAGGTCATAATCTTCCATGGAAGCTCCGGCAGAGGACAAGTAAGGAGGTGAAGAAGAAGGTCTATGTTTGCCCTGAGAGTTCTTGTGTTCATCATGATCCCTCCAGAGCTCTGGGTGATCTGACCGGGATTAAGAAGCACTTTTGCAGAAAGCACGGTGAGAAGAAGTGGAAATGCGACAAGTGTTCGAAGAAATACGCTGTTCAGTCTGATTGGAAAGCTCATTCCAAAATTTGTGGAACCAGAGAGTATAAATGCGATTGTGGAACTTTGTTTTCCTGGAGGGATAGCTTCATTAGACATAGAGCTTTCTGTGATGCATTGGCGAAGGAAAGTTCAAAAGCTCAGCCTATGCCGGTGGACAAACCGGATTTGCACTCCGACCCCGATGGCGATTCTCAGTCAGCGGCGGTCAAACCAAATCTAGAGCCTTCTCCTCCACCTCCACCTCCACCGCCTCCGCCATCATCACCGCCGGTTTCATCTCCTCCACAGTCAACTGGTGAGCTAATAACTGCATTACCTGTGCCTAGTCAAGAGCTGTCGGAGAATCCCTCGCAATGTACTGAAGAAGCGCCCGGTACACCTGGCCTGAGTCGGAGCAGCAGCAGCAGCAGCAAGAGCGCGAGCAGCAATAGCAGCTCGAGAAGCAGCGGATTTGCTGGCTTATTTGCTTCGTCGATGACATCAAGGAGCCTTCAACCTCCAAGACCTCCTGGTTTTACAGACCTAATGCAAGCCATGGTTTGTTCAGATCGCTCATCAGACTATGCATCATCTTCAACCATTGAACCTACTTCTCTGTCTCTTGCAATGAATCAAGGGCCATTGATCTTCGGAACAGCCAGCCAAGACCTCCGGCAGTATACGCCAACGCCACAGCCTGCAATGTCCGCCACAGCATTACTCCAAAAAGCAGCTCAAATAGGTGCAACAGCATCAAATGCCTCGTTGCTTCGTGGTTTGGGTTTAGTATCATCTTCTTCCTCTTTAGCTGCCCAGCAAGAGAGCTTGCCATGGAACCACCAGAGCCATGGTCAACCTGATGGCATCTCGATCGCTGCAGGGCTCGGACTCGGACGTCCCTGTGATGGAAACTCAGGATTGAAGGAACTAATGATGGGAAACCATTCCATGTTTCCCCCAAAACATACCACCCTGGATTTCCTTGGATTGGGAATGGCAGCTGATGGAAGCCCCAACACTGGCCTGGCTGCGCTAATTACATCAGTCGGCAGCGGTGTAGACATCGGGGTAACAACATTATCATACGGTGGTAGCGGTGTAGACGTCGGGGTAACAACGTTATCATACAGCGGCAGCGGTGACATACCGGAGAAGAAAACGGAAACAGAATAA 1584 50.38 MPADEKDSSMASGKASVSSPGAKSATKKKRNLPGMPDPEAEVIALSPKTLFATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSKEVKKKVYVCPESSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTLFSWRDSFIRHRAFCDALAKESSKAQPMPVDKPDLHSDPDGDSQSAAVKPNLEPSPPPPPPPPPPSSPPVSSPPQSTGELITALPVPSQELSENPSQCTEEAPGTPGLSRSSSSSSKSASSNSSSRSSGFAGLFASSMTSRSLQPPRPPGFTDLMQAMVCSDRSSDYASSSTIEPTSLSLAMNQGPLIFGTASQDLRQYTPTPQPAMSATALLQKAAQIGATASNASLLRGLGLVSSSSSLAAQQESLPWNHQSHGQPDGISIAAGLGLGRPCDGNSGLKELMMGNHSMFPPKHTTLDFLGLGMAADGSPNTGLAALITSVGSGVDIGVTTLSYGGSGVDVGVTTLSYSGSGDIPEKKTETE 527
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6488562 6490947 + CmoCh03G007930.1 Cmo03g00793 378256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g00793 527 MobiDBLite consensus disorder prediction 238 294 - -
Cmo03g00793 527 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 4 496 - -
Cmo03g00793 527 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 4 496 - -
Cmo03g00793 527 Gene3D Classic Zinc Finger 36 106 - -
Cmo03g00793 527 ProSitePatterns Zinc finger C2H2 type domain signature. 58 78 IPR013087 -
Cmo03g00793 527 SUPERFAMILY beta-beta-alpha zinc fingers 55 152 IPR036236 -
Cmo03g00793 527 MobiDBLite consensus disorder prediction 11 25 - -
Cmo03g00793 527 Gene3D Classic Zinc Finger 110 190 - -
Cmo03g00793 527 MobiDBLite consensus disorder prediction 216 237 - -
Cmo03g00793 527 SMART c2h2final6 97 127 IPR013087 -
Cmo03g00793 527 SMART c2h2final6 132 152 IPR013087 -
Cmo03g00793 527 SMART c2h2final6 56 78 IPR013087 -
Cmo03g00793 527 MobiDBLite consensus disorder prediction 1 39 - -
Cmo03g00793 527 ProSiteProfiles Zinc finger C2H2 type domain profile. 56 78 IPR013087 -
Cmo03g00793 527 MobiDBLite consensus disorder prediction 186 294 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01957 Cmo-Chr1:13912614 Cmo03g00793 Cmo-Chr3:6488562 2.51E-138 dispersed
Cmo03g00793 Cmo-Chr3:6488562 Cmo07g00500 Cmo-Chr7:2256698 0 dispersed
Cmo03g00791 Cmo-Chr3:6482721 Cmo03g00793 Cmo-Chr3:6488562 7.41E-127 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9413 None None None None Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g00793 K25869 - csv:101217597 640.573