Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g00796 ATGGGGACAGGGGAAGAGGGCACGCCTTCTAAAACTTCCAAGCCTCTCTCTTCATCTCAGGACATAGCTCCGGCACCTTCATATCCTGATTGGTCAAGCTCAATGCAGGCTTATTATGGTGCTGGTGCTACTCCACCTCCCTATTTTGCGTCTACTGTTGCTTCTCCAACTCCCCACCCTTACATTTGGGGAGGGCAGCATCCTTTGATGCCACCATATGGGACTCCAGTTCCTTATCCAGCTATATATCCTCCTGGGGGAGTTTATGCCCACCCCAATATCACCGTGACTCCTGGCTCAGCACCAATTAATGCAGAATATGAAGGAAAGTCCCCGGATGGAAAAGAAAGGGCCTCAAAAAAATCCAAGGGCACGTCAGGAAATACTGGTTCAGGTGGTGGTAGGACCGGGGATAGTGGAAAGGTGGCTTCAAGTTCTGGAAATGATGGTGCTTCTCAAAGTGCTGATAGTGGTACTGAGGGGTCATCAGAAGGCAGTGACGAGAACGCTAACCAACATGAATTGTCTGCAAATAAGAAGGGAAGCTTCAACCAGATGCTGGCTGATGGAGCCAATGCACAAAACAACACGGGTGGACCAAATGCCAAATCTTTAGTAACTGGGAAACCCATCACCTCCATTCCTGGAACTAATCTGAACATGGGAATGGATTTGTGGAATAACACCACGGGTGCTTCAGGGGCTGGAAAAGTGAGAGCGAATGCCGTCTCCTCAGCCATTGGTCCAACACCGATGGTTGGTCGTGATGGTGTGATGCCTGAGCAATGGGTTCAAGACGAACGTGAGCTGAAAAGGCAGAAAAGGAAGCAATCTAACCGAGAGTCTGCCAGGAGGTCAAGATTACGCAAGCAGGCGGAGTGTGAAGAATTACAGGCGAGAGTGCAGACATTGAACAACGAGAATCGTACTCTTAGGGATGAGCTGCAGAGGCTCTCCGAGGAATGTGAAAAGCTAACATCAGAAAATAGTTCCATCAAGGAAGAATTGACACGATTTTGTGGACCAGAAGCATTAGCCAACTTTGAAAAAGGAATCGCTGCTCCTGCTGCCCAATCTATTGATGACGAGGGTAAGGACTAA 1101 48.77 MGTGEEGTPSKTSKPLSSSQDIAPAPSYPDWSSSMQAYYGAGATPPPYFASTVASPTPHPYIWGGQHPLMPPYGTPVPYPAIYPPGGVYAHPNITVTPGSAPINAEYEGKSPDGKERASKKSKGTSGNTGSGGGRTGDSGKVASSSGNDGASQSADSGTEGSSEGSDENANQHELSANKKGSFNQMLADGANAQNNTGGPNAKSLVTGKPITSIPGTNLNMGMDLWNNTTGASGAGKVRANAVSSAIGPTPMVGRDGVMPEQWVQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVQTLNNENRTLRDELQRLSEECEKLTSENSSIKEELTRFCGPEALANFEKGIAAPAAQSIDDEGKD 366
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6493621 6497790 - CmoCh03G007960.1 Cmo03g00796 378259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g00796 366 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 274 289 IPR004827 GO:0003700|GO:0006355
Cmo03g00796 366 Coils Coil 280 335 - -
Cmo03g00796 366 PANTHER G-BOX-BINDING FACTOR 3-RELATED 1 363 IPR044827 GO:0003700|GO:0006355|GO:0043565
Cmo03g00796 366 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 269 332 IPR004827 GO:0003700|GO:0006355
Cmo03g00796 366 CDD bZIP_plant_GBF1 272 322 IPR045314 GO:0003700|GO:0006355
Cmo03g00796 366 PANTHER G-BOX-BINDING FACTOR 1 1 363 - -
Cmo03g00796 366 MobiDBLite consensus disorder prediction 1 28 - -
Cmo03g00796 366 SUPERFAMILY Leucine zipper domain 270 326 IPR046347 GO:0003700|GO:0006355
Cmo03g00796 366 Pfam bZIP transcription factor 267 329 IPR004827 GO:0003700|GO:0006355
Cmo03g00796 366 Gene3D - 270 325 - -
Cmo03g00796 366 SMART brlzneu 267 331 IPR004827 GO:0003700|GO:0006355
Cmo03g00796 366 MobiDBLite consensus disorder prediction 123 172 - -
Cmo03g00796 366 MobiDBLite consensus disorder prediction 267 290 - -
Cmo03g00796 366 MobiDBLite consensus disorder prediction 189 208 - -
Cmo03g00796 366 Pfam G-box binding protein MFMR 1 94 IPR012900 -
Cmo03g00796 366 MobiDBLite consensus disorder prediction 100 172 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01685 Cmo-Chr2:9670417 Cmo03g00796 Cmo-Chr3:6493621 2.36E-60 dispersed
Cmo03g00796 Cmo-Chr3:6493621 Cmo06g00633 Cmo-Chr6:3138763 1.43E-69 dispersed
Cmo03g00796 Cmo-Chr3:6493621 Cmo07g00502 Cmo-Chr7:2267677 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9414 PF07777 MFMR 6.70E-33 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g00796 K09060 - csv:101217128 640.188