Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g00823 ATGGCGGGTCAACCGTCAGATTCTTCCCCTCTCATTCCACCGGCTCCGATCAGCGACCCCAGTGAGATCGACCTCGAAGCCGGCCAAGGGGAGCAAATACAATGTAGAATTTGCCTCGAGACCGATGGTAGGGATTTTATTGCTCCGTGCAAATGCAAGGGGACATCAAAGTATGTTCATCGAGAATGTCTGGATCATTGGCGGGCTGTGAAGGAAGGATTTGCTTTTGCTCATTGTACCACATGTAAGGCCCCTTACCATTTGAGAGTACATGCTGTTGCTGACAGGAAATGGCGAACCCTGAAATTTCGATTTTTTGTGACTAGAGACATTGTATTTATATTTTTGGCGGTTCAGCTTGTAATTGCTTCTCTGGGATATTTGACGCATTTTGTAGATGGTTTTCAACATTACTGGCTTCGTCTTACGTGGGGTTTTGATAACAAAATTAGTTTTTATTACATATGTGGAGCTTTATTATTTTTTGCATTGCTCGGCTTATCTGGATGCTTCATCACGTGTTATGATCGGAGAGTTAGGAATGATTTGGCTCAGCCATGTAGAGAATTGTGTCTATGTTGTTGCCACCCTGGACTATGTGCTGACTGTCATTTGCCTGGTACTCTTTGTATGTGGACTGACTGCACCACTTGCTTCGAAAGTTGTGGAAGCATAGCAACCGAATGTGGATGCCTAGGAGGTGCTGGTGAAGCAGGACTGCCACTATTATTTATAATGGCCTTGATTGTTCTTGGTTTGTTCACAGTGATTGGTATCTTCTACAGCGTCTTGGTAGCTACCATGGTTGGACAACGAATATGGCAACGACACTATCACATACTTGCAAAAAGAATGCTTACAAAGGAATATGTTGTGGAAGATGTAGATGGGGAGATGACAGGATCTGAGTGGTTACCTCCACCACTTCCAGCTGAGCACGTTCAACAACTGAAAACTCTTGGCCTTTTATGA 972 44.14 MAGQPSDSSPLIPPAPISDPSEIDLEAGQGEQIQCRICLETDGRDFIAPCKCKGTSKYVHRECLDHWRAVKEGFAFAHCTTCKAPYHLRVHAVADRKWRTLKFRFFVTRDIVFIFLAVQLVIASLGYLTHFVDGFQHYWLRLTWGFDNKISFYYICGALLFFALLGLSGCFITCYDRRVRNDLAQPCRELCLCCCHPGLCADCHLPGTLCMWTDCTTCFESCGSIATECGCLGGAGEAGLPLLFIMALIVLGLFTVIGIFYSVLVATMVGQRIWQRHYHILAKRMLTKEYVVEDVDGEMTGSEWLPPPLPAEHVQQLKTLGLL 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6598502 6603258 + CmoCh03G008230.1 Cmo03g00823 378286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g00823 323 CDD RING_CH-C4HC3_MARCH 35 83 - -
Cmo03g00823 323 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 22 95 IPR013083 -
Cmo03g00823 323 SMART ringv_2 34 83 IPR011016 GO:0008270
Cmo03g00823 323 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 6 323 - -
Cmo03g00823 323 ProSiteProfiles Zinc finger RING-CH-type profile. 27 89 IPR011016 GO:0008270
Cmo03g00823 323 PANTHER BNAA04G12620D PROTEIN 6 323 - -
Cmo03g00823 323 Pfam RING-variant domain 35 82 IPR011016 GO:0008270
Cmo03g00823 323 SUPERFAMILY RING/U-box 31 87 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00002 Cmo-Chr1:6280 Cmo03g00823 Cmo-Chr3:6598502 7.81E-09 dispersed
Cmo03g00823 Cmo-Chr3:6598502 Cmo11g00552 Cmo-Chr11:2687384 1.05E-61 dispersed
Cmo03g00823 Cmo-Chr3:6598502 Cmo10g00622 Cmo-Chr10:2817436 6.37E-70 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g00823 - - csv:101214008 655.21