Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo03g00851 | ATGAGTATGATCGGGAACGGCGGCCCGCTGGTTCCGTTGCAAAACCTCTCGAAGATCCGTTCCAGAATGGATGCCGTCCAAATATTCCTATCAGATAACATCGACAGAGAAGTTCGTATTAGCAATCGGCAGATGGATGCCGTTTCATCTGAAATCGCCACTGCAATCCAACAGATCATCGTCAACGGCGCCGCTCTTCTAACCTGCGCCCGAGAGGAAACCCCGAGTACGCTGGATTTGACGGCTTTGACGACTCTAACTCATCCGAATCCTGTAGTAGAGAAATCAATGGCGGAGCTGAAGGTCGAGGGAGATGAGTTCGAGCCGGATAGGGAAATAGTGGAGTTGGATGCGATGGAATTGCTAGCGGAGCACATCCATTTCTGCGAAATCTGCGGGAAAGGGTTCAAGCGCGACGCGAATTTGCGGATGCATATGCGTGCCCATGGGAATCAATTCAAGACCCCAGAGGCGTTGGCGAAGCCGTTGGATATTGTTGATGCGAACGGCAGGGCGAAGCAGAGTCGATTTTCTTGCCCTTACGACGGTTGTCCGAGAAACAAAATGCACAAGAAGTTTAGAGCACTGAAGTCGTTGATTTGCGTAAAAAATCACTTCAAACGGAGCCACTGCCCTAAGATGTTCTCCTGCAATCGTTGCAACAAGAAGAGTTTCTCTGTTATGGCCGACTTGAAGAGCCACTTGAAGCACTGCGGTGAGTCCAAGTGGCGGTGTTCGTGTGGAACCACCTTCTCCCGTAAGGACAAGTTGTTTGGTCATATGGCGCTGTTCGAAGGCCACATGCCGGCAGTCGTGGATGACGACGATGGAAAGGGGAAAACATCCGTCACGGCGGCAACGCCGGAGACGGATGAAGATGGAGACTCTAATCGAATTTCGAAGGATGTCAATTTCCCAAACGCGTGGAATGGTTCGGATGATGGATGTTTCGAATCGTTTCTGGATGGGTTTGGTTCCATTGAGAATCACTGTTTGCAAGAGGTGCTGGGACTCCCATGTCAGATGTCTGTCTCTTTGGAAGCTCTGGCAATGGCCGGGATGGACTCCGGCGAGTGGGGCATAGATGTTGAGGAATGGGAAACCCAAGACTTGGACCGCTGCCCTCCCCCGTATCTCCTCGCCGAAGAACGAGATGACGATGAAGCTTCAGAACAACCAAGTCGTTCTGAGCCACCGTCGCAGAGTCGCCGGCGATCATGA | 1221 | 51.84 | MSMIGNGGPLVPLQNLSKIRSRMDAVQIFLSDNIDREVRISNRQMDAVSSEIATAIQQIIVNGAALLTCAREETPSTLDLTALTTLTHPNPVVEKSMAELKVEGDEFEPDREIVELDAMELLAEHIHFCEICGKGFKRDANLRMHMRAHGNQFKTPEALAKPLDIVDANGRAKQSRFSCPYDGCPRNKMHKKFRALKSLICVKNHFKRSHCPKMFSCNRCNKKSFSVMADLKSHLKHCGESKWRCSCGTTFSRKDKLFGHMALFEGHMPAVVDDDDGKGKTSVTAATPETDEDGDSNRISKDVNFPNAWNGSDDGCFESFLDGFGSIENHCLQEVLGLPCQMSVSLEALAMAGMDSGEWGIDVEEWETQDLDRCPPPYLLAEERDDDEASEQPSRSEPPSQSRRRS | 406 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 6712504 | 6714403 | + | CmoCh03G008510.1 | Cmo03g00851 | 378314 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo03g00851 | 406 | Gene3D | Classic Zinc Finger | 207 | 271 | - | - | |
Cmo03g00851 | 406 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 129 | 149 | IPR013087 | - | |
Cmo03g00851 | 406 | SUPERFAMILY | beta-beta-alpha zinc fingers | 124 | 150 | IPR036236 | - | |
Cmo03g00851 | 406 | MobiDBLite | consensus disorder prediction | 275 | 301 | - | - | |
Cmo03g00851 | 406 | Pfam | Zinc finger, C2H2 type | 128 | 149 | IPR013087 | - | |
Cmo03g00851 | 406 | PANTHER | ZINC FINGER PROTEIN STOP1 HOMOLOG | 8 | 343 | - | - | |
Cmo03g00851 | 406 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 127 | 154 | IPR013087 | - | |
Cmo03g00851 | 406 | MobiDBLite | consensus disorder prediction | 366 | 406 | - | - | |
Cmo03g00851 | 406 | Gene3D | Classic Zinc Finger | 126 | 206 | - | - | |
Cmo03g00851 | 406 | SMART | c2h2final6 | 127 | 149 | IPR013087 | - | |
Cmo03g00851 | 406 | SMART | c2h2final6 | 177 | 210 | IPR013087 | - | |
Cmo03g00851 | 406 | SMART | c2h2final6 | 215 | 237 | IPR013087 | - | |
Cmo03g00851 | 406 | SMART | c2h2final6 | 243 | 267 | IPR013087 | - | |
Cmo03g00851 | 406 | PANTHER | PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 | 8 | 343 | IPR044300 | GO:0010044|GO:0010447 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo03g00851 | Cmo-Chr3:6712504 | Cmo09g01158 | Cmo-Chr9:7299396 | 3.06E-73 | dispersed | |
Cmo16g00760 | Cmo-Chr16:3816533 | Cmo03g00851 | Cmo-Chr3:6712504 | 4.50E-12 | dispersed | |
Cmo16g00761 | Cmo-Chr16:3819587 | Cmo03g00851 | Cmo-Chr3:6712504 | 4.74E-13 | dispersed | |
Cmo03g00851 | Cmo-Chr3:6712504 | Cmo07g00551 | Cmo-Chr7:2481107 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
9419 | PF00096 | zf-C2H2 | 0.00017 | CL0361 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo03g00851 | - | - | cmax:111496804 | 557.37 |