Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g00851 ATGAGTATGATCGGGAACGGCGGCCCGCTGGTTCCGTTGCAAAACCTCTCGAAGATCCGTTCCAGAATGGATGCCGTCCAAATATTCCTATCAGATAACATCGACAGAGAAGTTCGTATTAGCAATCGGCAGATGGATGCCGTTTCATCTGAAATCGCCACTGCAATCCAACAGATCATCGTCAACGGCGCCGCTCTTCTAACCTGCGCCCGAGAGGAAACCCCGAGTACGCTGGATTTGACGGCTTTGACGACTCTAACTCATCCGAATCCTGTAGTAGAGAAATCAATGGCGGAGCTGAAGGTCGAGGGAGATGAGTTCGAGCCGGATAGGGAAATAGTGGAGTTGGATGCGATGGAATTGCTAGCGGAGCACATCCATTTCTGCGAAATCTGCGGGAAAGGGTTCAAGCGCGACGCGAATTTGCGGATGCATATGCGTGCCCATGGGAATCAATTCAAGACCCCAGAGGCGTTGGCGAAGCCGTTGGATATTGTTGATGCGAACGGCAGGGCGAAGCAGAGTCGATTTTCTTGCCCTTACGACGGTTGTCCGAGAAACAAAATGCACAAGAAGTTTAGAGCACTGAAGTCGTTGATTTGCGTAAAAAATCACTTCAAACGGAGCCACTGCCCTAAGATGTTCTCCTGCAATCGTTGCAACAAGAAGAGTTTCTCTGTTATGGCCGACTTGAAGAGCCACTTGAAGCACTGCGGTGAGTCCAAGTGGCGGTGTTCGTGTGGAACCACCTTCTCCCGTAAGGACAAGTTGTTTGGTCATATGGCGCTGTTCGAAGGCCACATGCCGGCAGTCGTGGATGACGACGATGGAAAGGGGAAAACATCCGTCACGGCGGCAACGCCGGAGACGGATGAAGATGGAGACTCTAATCGAATTTCGAAGGATGTCAATTTCCCAAACGCGTGGAATGGTTCGGATGATGGATGTTTCGAATCGTTTCTGGATGGGTTTGGTTCCATTGAGAATCACTGTTTGCAAGAGGTGCTGGGACTCCCATGTCAGATGTCTGTCTCTTTGGAAGCTCTGGCAATGGCCGGGATGGACTCCGGCGAGTGGGGCATAGATGTTGAGGAATGGGAAACCCAAGACTTGGACCGCTGCCCTCCCCCGTATCTCCTCGCCGAAGAACGAGATGACGATGAAGCTTCAGAACAACCAAGTCGTTCTGAGCCACCGTCGCAGAGTCGCCGGCGATCATGA 1221 51.84 MSMIGNGGPLVPLQNLSKIRSRMDAVQIFLSDNIDREVRISNRQMDAVSSEIATAIQQIIVNGAALLTCAREETPSTLDLTALTTLTHPNPVVEKSMAELKVEGDEFEPDREIVELDAMELLAEHIHFCEICGKGFKRDANLRMHMRAHGNQFKTPEALAKPLDIVDANGRAKQSRFSCPYDGCPRNKMHKKFRALKSLICVKNHFKRSHCPKMFSCNRCNKKSFSVMADLKSHLKHCGESKWRCSCGTTFSRKDKLFGHMALFEGHMPAVVDDDDGKGKTSVTAATPETDEDGDSNRISKDVNFPNAWNGSDDGCFESFLDGFGSIENHCLQEVLGLPCQMSVSLEALAMAGMDSGEWGIDVEEWETQDLDRCPPPYLLAEERDDDEASEQPSRSEPPSQSRRRS 406
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6712504 6714403 + CmoCh03G008510.1 Cmo03g00851 378314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g00851 406 Gene3D Classic Zinc Finger 207 271 - -
Cmo03g00851 406 ProSitePatterns Zinc finger C2H2 type domain signature. 129 149 IPR013087 -
Cmo03g00851 406 SUPERFAMILY beta-beta-alpha zinc fingers 124 150 IPR036236 -
Cmo03g00851 406 MobiDBLite consensus disorder prediction 275 301 - -
Cmo03g00851 406 Pfam Zinc finger, C2H2 type 128 149 IPR013087 -
Cmo03g00851 406 PANTHER ZINC FINGER PROTEIN STOP1 HOMOLOG 8 343 - -
Cmo03g00851 406 ProSiteProfiles Zinc finger C2H2 type domain profile. 127 154 IPR013087 -
Cmo03g00851 406 MobiDBLite consensus disorder prediction 366 406 - -
Cmo03g00851 406 Gene3D Classic Zinc Finger 126 206 - -
Cmo03g00851 406 SMART c2h2final6 127 149 IPR013087 -
Cmo03g00851 406 SMART c2h2final6 177 210 IPR013087 -
Cmo03g00851 406 SMART c2h2final6 215 237 IPR013087 -
Cmo03g00851 406 SMART c2h2final6 243 267 IPR013087 -
Cmo03g00851 406 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 8 343 IPR044300 GO:0010044|GO:0010447
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00851 Cmo-Chr3:6712504 Cmo09g01158 Cmo-Chr9:7299396 3.06E-73 dispersed
Cmo16g00760 Cmo-Chr16:3816533 Cmo03g00851 Cmo-Chr3:6712504 4.50E-12 dispersed
Cmo16g00761 Cmo-Chr16:3819587 Cmo03g00851 Cmo-Chr3:6712504 4.74E-13 dispersed
Cmo03g00851 Cmo-Chr3:6712504 Cmo07g00551 Cmo-Chr7:2481107 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9419 PF00096 zf-C2H2 0.00017 CL0361 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g00851 - - cmax:111496804 557.37