Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g00875 ATGGCGGATACTTTTTACTGTACACAGAACAATGCCAATACTTGTTTTGATGATCAATTTGATTGTAATGCCATAAATAATAAGGTTGAGCAATGCTCAATTTTTCTGCCCCATACTTTGCTGGGTTTTGCTTTACAGAGTGAAGAGAGGGTGAGAGGAATGGTGGAAAAAGAGCTTGAGCATTTGCCCAGCCATGATTATCTTAAGAGACTGCGCAGTGGGGATTTGGATTTGAAGTTTAGGAGAGAAGCTCTTGATTGGATTTGGAAGGCTCATGCCCATTACAGCTTTGGACCTCTCACTCTTTGTCTATCTTTAAACTACTTGGACCGTTTCCTCTCAGTGTATCACTTGCCTATGGATAAAAGCTGGACTGTGCAGCTGCTGTCAGTTGCTTGTGTGTCTCTAGCAGCAAAGATGGAGGAGACAGAAGTACCACTGTCCATAGATTTACAGGTGGAGGAGCCTAAGTTTGTGTTCGAAGCAAAAACCATACAAAGAATGGAGCTTCTGGTTCTAAGCAGGTTGAAATGGAAGATGCATGCCATAACTCCATTTTCTTTCATTGATTATTTCCTGAGTAAGATGAGTGTTGGAGAGCACGTATCGAGGGTATCCTTGTCAAAATCTTCACAACTCATTCTGAGCACAATTAAAGGCATTGACTTCTTGGAATTCAGGCCTTCTGAAATTGCTTTAGCTGTGGCAATTTCCACTTCAGGAGAATGGCAAGCATCCGACGTCAATAAAGCAATCCTTTCTTTTCCATATATGGAGAAAGAGAGGGTGATGAAGTGCATCGATCTGATCAGAGATGTATCGTTGATTAGTAATGTAAATACATTGGTTGCTGATAATGTTGCTGGTTCAGTTCCTCAAAGCCCTGTTGGGGTGTTGGATGCAGCTTGTTTGAGCCAAAAACAGAAGAACTATTAA 936 41.45 MADTFYCTQNNANTCFDDQFDCNAINNKVEQCSIFLPHTLLGFALQSEERVRGMVEKELEHLPSHDYLKRLRSGDLDLKFRREALDWIWKAHAHYSFGPLTLCLSLNYLDRFLSVYHLPMDKSWTVQLLSVACVSLAAKMEETEVPLSIDLQVEEPKFVFEAKTIQRMELLVLSRLKWKMHAITPFSFIDYFLSKMSVGEHVSRVSLSKSSQLILSTIKGIDFLEFRPSEIALAVAISTSGEWQASDVNKAILSFPYMEKERVMKCIDLIRDVSLISNVNTLVADNVAGSVPQSPVGVLDAACLSQKQKNY 311
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6824498 6826642 - CmoCh03G008750.1 Cmo03g00875 378338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g00875 311 Pfam Cyclin, C-terminal domain 183 276 IPR004367 -
Cmo03g00875 311 PANTHER CYCLINS 41 304 IPR039361 -
Cmo03g00875 311 SUPERFAMILY Cyclin-like 43 181 IPR036915 -
Cmo03g00875 311 ProSitePatterns Cyclins signature. 81 112 IPR006671 -
Cmo03g00875 311 SMART cyclin_7 86 174 IPR013763 -
Cmo03g00875 311 Pfam Cyclin, N-terminal domain 54 180 IPR006671 -
Cmo03g00875 311 PANTHER CYCLIN-D4-1-LIKE 41 304 - -
Cmo03g00875 311 SMART Cyclin_C_2 183 293 IPR004367 -
Cmo03g00875 311 CDD CYCLIN 81 173 IPR013763 -
Cmo03g00875 311 Gene3D - 64 181 - -
Cmo03g00875 311 Gene3D - 54 268 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00135 Cmo-Chr2:677314 Cmo03g00875 Cmo-Chr3:6824498 3.20E-41 dispersed
Cmo03g00875 Cmo-Chr3:6824498 Cmo16g00330 Cmo-Chr16:1507017 3.67E-62 dispersed
Cmo07g00695 Cmo-Chr7:3141146 Cmo03g00875 Cmo-Chr3:6824498 6.12E-45 dispersed
Cmo11g01386 Cmo-Chr11:9696714 Cmo03g00875 Cmo-Chr3:6824498 7.70E-49 dispersed
Cmo16g00370 Cmo-Chr16:1697863 Cmo03g00875 Cmo-Chr3:6824498 1.20E-49 dispersed
Cmo20g00592 Cmo-Chr20:2914881 Cmo03g00875 Cmo-Chr3:6824498 5.50E-37 dispersed
Cmo12g00169 Cmo-Chr12:1117393 Cmo03g00875 Cmo-Chr3:6824498 6.61E-90 wgd
Cmo03g00875 Cmo-Chr3:6824498 Cmo05g00557 Cmo-Chr5:2692406 4.90E-78 wgd
Cmo03g00875 Cmo-Chr3:6824498 Cmo07g00571 Cmo-Chr7:2567021 2.89E-161 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g00875 K18810 - csv:101209378 462.611