Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g00881 ATGGCGAAAGAGAGAATCCAGATCAGGAAGATCGATAACGCTACGGCTAGACAAGTCACCTTCTCCAAGCGCCGGAGGGGACTGTTTAAGAAAGCAAAAGAGCTGTCTGTTCTATGCGATGCCGATGTCGCCCTCATTGTCTTCTCCGCTACCGGAAAGCTGTTTGAGTTCTCCAGCTCAAGCATGAAGGGAATCATAGAAAGACATAATTTGCACTCTAAGAACCTTCAGAAACTGGAACAACCATCCCTTGAACTACAGCTGGTTGAAAACAGCAATTACACCCGACTAAACAAGGAAATTGCTGAGAAAACTCGGCAGCTAAGGCAGATGAGGGGAGAAGAGCTCCAAACATTGAATATAGAGGAACTGCAGCAGCTAGAGAAGTCACTGGAGTGTGGATTGAGCCGTGTGATGGAGAAAAAGGGTGAACGAATCATGACAGAAATATCTGATCTTCAAAGAAAGTCGGCTGAGTTGATGGAAGAGAATAGGCGACTGAAACAAGCGCAAAAAATGAATTGCGTGAGGAACCTTGGCGTTGAGCCGGAGAATTTGGTCGTGGAAGATGGCCAGTCGTCGAACTCCGTCACTGAAGCTTGTGTCTCCAACTCCAATGGCCCGCCTCAAGATCTGGATAGCTCAGACACATCTCTGAAACTAGGGCTGCCGTATTCCGGGTGA 684 47.66 MAKERIQIRKIDNATARQVTFSKRRRGLFKKAKELSVLCDADVALIVFSATGKLFEFSSSSMKGIIERHNLHSKNLQKLEQPSLELQLVENSNYTRLNKEIAEKTRQLRQMRGEELQTLNIEELQQLEKSLECGLSRVMEKKGERIMTEISDLQRKSAELMEENRRLKQAQKMNCVRNLGVEPENLVVEDGQSSNSVTEACVSNSNGPPQDLDSSDTSLKLGLPYSG 227
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6865695 6868639 + CmoCh03G008810.1 Cmo03g00881 378344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g00881 227 SUPERFAMILY SRF-like 3 85 IPR036879 GO:0003677|GO:0046983
Cmo03g00881 227 PANTHER MADS-BOX PROTEIN SVP ISOFORM X1 1 224 - -
Cmo03g00881 227 MobiDBLite consensus disorder prediction 189 227 - -
Cmo03g00881 227 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Cmo03g00881 227 ProSiteProfiles K-box domain profile. 87 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cmo03g00881 227 Coils Coil 143 173 - -
Cmo03g00881 227 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cmo03g00881 227 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Cmo03g00881 227 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cmo03g00881 227 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 224 - -
Cmo03g00881 227 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cmo03g00881 227 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cmo03g00881 227 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cmo03g00881 227 Coils Coil 94 114 - -
Cmo03g00881 227 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Cmo03g00881 227 Pfam K-box region 92 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00881 Cmo-Chr3:6865695 Cmo12g00151 Cmo-Chr12:982096 3.87E-84 dispersed
Cmo07g00577 Cmo-Chr7:2614037 Cmo03g00881 Cmo-Chr3:6865695 8.67E-36 transposed
Cmo19g00492 Cmo-Chr19:5857286 Cmo03g00881 Cmo-Chr3:6865695 3.30E-67 transposed
Cmo16g00296 Cmo-Chr16:1342335 Cmo03g00881 Cmo-Chr3:6865695 1.17E-60 wgd
Cmo03g00881 Cmo-Chr3:6865695 Cmo07g00576 Cmo-Chr7:2610497 6.34E-103 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9423 PF01486 K-box 2.20E-16 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g00881 - - csv:101203152 404.831