Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g00888 ATGGGTACTCAAAGTCCAACAGGATTGGTTCCACACAAGAAGATGCTTCCTCCTCAACCGGGAAGATTTGATGATCGTGAAGATCTCATTAAATATGTTCGCGACTTTGGTGCTGATCAGGGATATGTGGTAACAATTAAGAAGTCTAGGAAAGATAGAAGGGTCATCCTTGGTTGTGATAGAGGAGGTCTGTACCGTAACAGGCGTAAGATTGACGAGAGTCGGCGCAAAAGGAAAGCTAGCTCACGCTTGATAAATTGCCCATTTGAAGCAATTGGCAAGAAGGAAGATGATGCCTGGATGCTTACAATTAGAAATGGGGACCATAACCACGAGCCCTTAAAAGACATGTCAGAGCATCCTTACAGTCGCCGTTTTACTGAGGATGAAGTAAGGCAAATAAAACTGATGACTGAAGCTGGTATAAAACCACGCCAAGTGCTTAAAGCTCTCAAACAACATAATCCAGATTTGCAGTCAACACCAAGGCATTTGTACAACCTCAAAGCCAAAATTCGCCAAGGAAATCTATCAGAAAAGAATTTCAAGTCATGGAGACCTAATATTTCACTTCATGCAAATAGTAGTCATACAGTTATCGGGGATACGGTCAAGCATACGCATCAGCTGAAGGTTCCTAATTTAATTGGAGGGGAGTTCTTGGATTCGCACAACTGTCCAGTGGTTGATGTTATCAATCCAGCAACACAAGAAGTTGTTTCTCATGTTCCTTTAACAACCTATGAAGAGTTTAAGGCCGCAGTTAATGCAGCCAAACAAGCCTTTCCCTCATGGAAAAACACACCGATTTCTACTCGTCAATGTGTTATGTTTAAGTTCCAGGAGCTCATCCTCAGAGACATGGATAAGCTTGTGACGAATATTGTCATAGAACAGGGAAAAACATTAAAGGATGCTCAAAATGATATCATCTGTGGTTTAGAGGTGGTTAAACATGTTTGTGGATTGGCCACTATGCAAATGGGGGAGTTCGTACCTAATGCATCTGATGGAATGGACTCGTATTGCATCCGAGATCCAATAGGTGTTTGCGCTGGGATCTGCTCTTTTAACCATCCAGCAACAGTTTCCTTATGGATGTTTCCGGTTGCAGTTACATGTGGCAATACATTTGTTCTTAAGCCATGTGAAACATACCCGGGGGCTTCAATGTTGCTAGCTGCATTAGCAGTGGAGGCTGGCTTGCCTGATGGTGTTCTAAATATTGTTCATGGAACCCATGATATCATAAACTATATATGTGACGATGAGGACATAAAAGCCATATCTTTTGCCAGTTCATGTTCTGCTGGAAAGAACATATATGCTAGGGCCGCTGCTACGGGAAAGCAAGTTCAGTCCCACTTCGGAGGCAAGAGCCATGCAATTATTATGCCTGATGCTAACATGGAGGCTACTTTAAATGCTCTGGTTGATGCTGGATTCGGTACTTCTGGACAGACATGTATGGCTATCAACATTGTTGTCTCCGTTGGGAGTTCAATTCTATGGAAAAAAAAACTTGTGGAATGTGCCAAAGCACTTAAAGTGAATGTGGGGACAGATCCCAATGCTGACCTTGGTCCTGTAATTACCAAAGAGGTGAAAGATCGTTTTTGTAGATTAGTTCAAAGTGGCATTGAAGATGGTGCTAGACTTCTGCTTGACGGTAGAGATATTGTGGTCCCAGGATATGAAAATGGAAATTTTGTTGGTCCAACCATTTTATCTGATGTAACAACGGACATGGAGTGCTACAAGGAAGAATTTCTTGGACCAGTTCTCCTTTGTATGCAGGCTGACAACCTAGAGGAGGCTATATCCATTGTAAACAGAAACAAGTACTTCTTTTAA 1854 42.18 MGTQSPTGLVPHKKMLPPQPGRFDDREDLIKYVRDFGADQGYVVTIKKSRKDRRVILGCDRGGLYRNRRKIDESRRKRKASSRLINCPFEAIGKKEDDAWMLTIRNGDHNHEPLKDMSEHPYSRRFTEDEVRQIKLMTEAGIKPRQVLKALKQHNPDLQSTPRHLYNLKAKIRQGNLSEKNFKSWRPNISLHANSSHTVIGDTVKHTHQLKVPNLIGGEFLDSHNCPVVDVINPATQEVVSHVPLTTYEEFKAAVNAAKQAFPSWKNTPISTRQCVMFKFQELILRDMDKLVTNIVIEQGKTLKDAQNDIICGLEVVKHVCGLATMQMGEFVPNASDGMDSYCIRDPIGVCAGICSFNHPATVSLWMFPVAVTCGNTFVLKPCETYPGASMLLAALAVEAGLPDGVLNIVHGTHDIINYICDDEDIKAISFASSCSAGKNIYARAAATGKQVQSHFGGKSHAIIMPDANMEATLNALVDAGFGTSGQTCMAINIVVSVGSSILWKKKLVECAKALKVNVGTDPNADLGPVITKEVKDRFCRLVQSGIEDGARLLLDGRDIVVPGYENGNFVGPTILSDVTTDMECYKEEFLGPVLLCMQADNLEEAISIVNRNKYFF 617
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6890483 6898271 - CmoCh03G008880.1 Cmo03g00888 378351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g00888 617 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 231 456 IPR016162 GO:0016491
Cmo03g00888 617 Pfam Aldehyde dehydrogenase family 227 615 IPR015590 GO:0016491
Cmo03g00888 617 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 482 493 IPR016160 GO:0016491
Cmo03g00888 617 SUPERFAMILY ALDH-like 203 615 IPR016161 GO:0016491
Cmo03g00888 617 MobiDBLite consensus disorder prediction 1 21 - -
Cmo03g00888 617 PANTHER METHYLMALONATE-SEMIALDEHYDE DEHYDROGENASE [ACYLATING], MITOCHONDRIAL-LIKE 1 615 - -
Cmo03g00888 617 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 457 615 IPR016163 GO:0016620
Cmo03g00888 617 PANTHER MALONATE-SEMIALDEHYDE DEHYDROGENASE 1 615 IPR010061 GO:0004491
Cmo03g00888 617 TIGRFAM MMSDH: methylmalonate-semialdehyde dehydrogenase (acylating) 214 615 IPR010061 GO:0004491
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00888 Cmo-Chr3:6890483 Cmo20g00311 Cmo-Chr20:1515459 7.64E-53 dispersed
Cmo19g00507 Cmo-Chr19:6005476 Cmo03g00888 Cmo-Chr3:6890483 3.97E-20 dispersed
Cmo03g00888 Cmo-Chr3:6890483 Cmo11g01452 Cmo-Chr11:10209597 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g00888 K00140 - csv:101207178 1117.83