Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo03g00890 | ATGGCGAAATCACCGGCCGAAGAGCACCCTAAGAAGGCTTTTGGATGGGCTGCCAGAGATGCCTCCGGCGTTCTTTCTCCATTTAATTTCTCCCGAAGAGAAACAGGGGACAGTGATGTAGCTTTTAAAGTTCTTTACTGTGGGATATGCCATTCTGATCTTCACATGTTGAAAAACGAGTGGGGCAATACCATTTACCCTATTGTTCCTGGGCATGAAATCGCGGGTGAGGTAACAGAGGTTGGAAGCAAAGTAAAGAATTTCAAGGTTGGAGACAGAGTGGGCGTAGGATGTATGGTCGGATCCTGCCGCTCCTGTGATAGCTGTTCCAACGACCTTGAGAACTATTGCCCAAAAATGATTCTCACCTACTCCGCCAAGGACTCCGATGGCACCATAACCTACGGTGGCTACTCCGACTGTATGGTCGCCAACGAGCACTTCATCGTTCGCATTCCTGACAGCATCCCTCTGCACGCCGGGGCTCCGCTGCTTTGCGCTGGTATCACGGTTTACAGCCCCTTGCGATACTATGGACTTGACAAGCCTGGAATAACAATCGGCGTGGTTGGCCTCGGAGGGCTTGGCCATGTAGCTGTCAAATTTGCCAAGGCGCTTGGCGCTAAGGTCACGGTGATTAGCACCTCGCCTAACAAGAAGCAGGAGGCTATTGAACGTCTTGGGGCTGATTCATTCTTGGTCAGCCGTGATCAAGAGCAGATGCAGGCTGCTAAGGGGACGTTGGATGGTATCATAGACACAGTCTCTGCCTCACATCCCCTGCTTCCTCTGCTTTCTCTTGTGAAAACACATGGAAAGTTTGTTCTGGTCGGTGCACCAGAGAAGCCTCTCGAGGTCCCAGCCTTCGCTCTTATTGGGGGTAGGAAAACATTGTCGGGTAGTTGCATTGGAGGGATTAAGGAAACGCAAGAGATGATTGATTTTGCGGCCAAACACAACATAACTGCGGATGTTGAGGTGATTCCGATCGCCGATGTCAACACTGCCATGGAGCGTATGATAAAACAGGATGTCAAATATCGATTCGTCATCGACATTGGCAACACAATGAAGCCTAGCACTTAA | 1086 | 50.18 | MAKSPAEEHPKKAFGWAARDASGVLSPFNFSRRETGDSDVAFKVLYCGICHSDLHMLKNEWGNTIYPIVPGHEIAGEVTEVGSKVKNFKVGDRVGVGCMVGSCRSCDSCSNDLENYCPKMILTYSAKDSDGTITYGGYSDCMVANEHFIVRIPDSIPLHAGAPLLCAGITVYSPLRYYGLDKPGITIGVVGLGGLGHVAVKFAKALGAKVTVISTSPNKKQEAIERLGADSFLVSRDQEQMQAAKGTLDGIIDTVSASHPLLPLLSLVKTHGKFVLVGAPEKPLEVPAFALIGGRKTLSGSCIGGIKETQEMIDFAAKHNITADVEVIPIADVNTAMERMIKQDVKYRFVIDIGNTMKPST | 361 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 6905091 | 6907033 | + | CmoCh03G008900.1 | Cmo03g00890 | 378353 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo03g00890 | 361 | ProSitePatterns | Zinc-containing alcohol dehydrogenases signature. | 71 | 85 | IPR002328 | GO:0008270|GO:0016491 | |
Cmo03g00890 | 361 | Gene3D | - | 167 | 323 | - | - | |
Cmo03g00890 | 361 | CDD | CAD1 | 14 | 352 | - | - | |
Cmo03g00890 | 361 | PANTHER | ALDEHYDE REDUCTASE | 2 | 359 | - | - | |
Cmo03g00890 | 361 | Gene3D | - | 16 | 353 | - | - | |
Cmo03g00890 | 361 | Pfam | Zinc-binding dehydrogenase | 194 | 317 | IPR013149 | - | |
Cmo03g00890 | 361 | Pfam | Alcohol dehydrogenase GroES-like domain | 38 | 151 | IPR013154 | - | |
Cmo03g00890 | 361 | SMART | PKS_ER_names_mod | 23 | 351 | IPR020843 | GO:0016491 | |
Cmo03g00890 | 361 | SUPERFAMILY | GroES-like | 19 | 184 | IPR011032 | - | |
Cmo03g00890 | 361 | PANTHER | LOW QUALITY PROTEIN: 8-HYDROXYGERANIOL DEHYDROGENASE-LIKE | 2 | 359 | - | - | |
Cmo03g00890 | 361 | SUPERFAMILY | NAD(P)-binding Rossmann-fold domains | 157 | 321 | IPR036291 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo03g00890 | Cmo-Chr3:6905091 | Cmo20g01090 | Cmo-Chr20:10384192 | 2.37E-170 | dispersed | |
Cmo03g00890 | Cmo-Chr3:6905091 | Cmo02g00593 | Cmo-Chr2:3594612 | 2.11E-122 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo03g00890 | - | K23232 | csv:101222715 | 658.677 |