Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g00890 ATGGCGAAATCACCGGCCGAAGAGCACCCTAAGAAGGCTTTTGGATGGGCTGCCAGAGATGCCTCCGGCGTTCTTTCTCCATTTAATTTCTCCCGAAGAGAAACAGGGGACAGTGATGTAGCTTTTAAAGTTCTTTACTGTGGGATATGCCATTCTGATCTTCACATGTTGAAAAACGAGTGGGGCAATACCATTTACCCTATTGTTCCTGGGCATGAAATCGCGGGTGAGGTAACAGAGGTTGGAAGCAAAGTAAAGAATTTCAAGGTTGGAGACAGAGTGGGCGTAGGATGTATGGTCGGATCCTGCCGCTCCTGTGATAGCTGTTCCAACGACCTTGAGAACTATTGCCCAAAAATGATTCTCACCTACTCCGCCAAGGACTCCGATGGCACCATAACCTACGGTGGCTACTCCGACTGTATGGTCGCCAACGAGCACTTCATCGTTCGCATTCCTGACAGCATCCCTCTGCACGCCGGGGCTCCGCTGCTTTGCGCTGGTATCACGGTTTACAGCCCCTTGCGATACTATGGACTTGACAAGCCTGGAATAACAATCGGCGTGGTTGGCCTCGGAGGGCTTGGCCATGTAGCTGTCAAATTTGCCAAGGCGCTTGGCGCTAAGGTCACGGTGATTAGCACCTCGCCTAACAAGAAGCAGGAGGCTATTGAACGTCTTGGGGCTGATTCATTCTTGGTCAGCCGTGATCAAGAGCAGATGCAGGCTGCTAAGGGGACGTTGGATGGTATCATAGACACAGTCTCTGCCTCACATCCCCTGCTTCCTCTGCTTTCTCTTGTGAAAACACATGGAAAGTTTGTTCTGGTCGGTGCACCAGAGAAGCCTCTCGAGGTCCCAGCCTTCGCTCTTATTGGGGGTAGGAAAACATTGTCGGGTAGTTGCATTGGAGGGATTAAGGAAACGCAAGAGATGATTGATTTTGCGGCCAAACACAACATAACTGCGGATGTTGAGGTGATTCCGATCGCCGATGTCAACACTGCCATGGAGCGTATGATAAAACAGGATGTCAAATATCGATTCGTCATCGACATTGGCAACACAATGAAGCCTAGCACTTAA 1086 50.18 MAKSPAEEHPKKAFGWAARDASGVLSPFNFSRRETGDSDVAFKVLYCGICHSDLHMLKNEWGNTIYPIVPGHEIAGEVTEVGSKVKNFKVGDRVGVGCMVGSCRSCDSCSNDLENYCPKMILTYSAKDSDGTITYGGYSDCMVANEHFIVRIPDSIPLHAGAPLLCAGITVYSPLRYYGLDKPGITIGVVGLGGLGHVAVKFAKALGAKVTVISTSPNKKQEAIERLGADSFLVSRDQEQMQAAKGTLDGIIDTVSASHPLLPLLSLVKTHGKFVLVGAPEKPLEVPAFALIGGRKTLSGSCIGGIKETQEMIDFAAKHNITADVEVIPIADVNTAMERMIKQDVKYRFVIDIGNTMKPST 361
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6905091 6907033 + CmoCh03G008900.1 Cmo03g00890 378353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g00890 361 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 71 85 IPR002328 GO:0008270|GO:0016491
Cmo03g00890 361 Gene3D - 167 323 - -
Cmo03g00890 361 CDD CAD1 14 352 - -
Cmo03g00890 361 PANTHER ALDEHYDE REDUCTASE 2 359 - -
Cmo03g00890 361 Gene3D - 16 353 - -
Cmo03g00890 361 Pfam Zinc-binding dehydrogenase 194 317 IPR013149 -
Cmo03g00890 361 Pfam Alcohol dehydrogenase GroES-like domain 38 151 IPR013154 -
Cmo03g00890 361 SMART PKS_ER_names_mod 23 351 IPR020843 GO:0016491
Cmo03g00890 361 SUPERFAMILY GroES-like 19 184 IPR011032 -
Cmo03g00890 361 PANTHER LOW QUALITY PROTEIN: 8-HYDROXYGERANIOL DEHYDROGENASE-LIKE 2 359 - -
Cmo03g00890 361 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 157 321 IPR036291 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00890 Cmo-Chr3:6905091 Cmo20g01090 Cmo-Chr20:10384192 2.37E-170 dispersed
Cmo03g00890 Cmo-Chr3:6905091 Cmo02g00593 Cmo-Chr2:3594612 2.11E-122 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g00890 - K23232 csv:101222715 658.677