Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo03g00891 | ATGGAGAAGAGAGGCAAGGCAAGAAGGCAGCACCCATACTGGACATGGAAACTTGGGTTCTCAGCAATGCCGCTCCTTTTCTTATTCTTCAGTTTAACCCTCGCCCACAACAATTCCTCCCAACGGTTACTTGTAATCAATTGCAGAAGAATGGTAAGAAAGTTGGTGAAGAACAATGAATCTATGCTGTCGCGCGATGTAACGTTAGAATGGGAGAATCGTGGACAGGTAGTAATGGACAATGGGTTAGTTCGAATCACTTTATCCAGACCAGAAGGCAACGTTATTGCCCTAAAATACAATGCTCTTGATAACCTACTTGAAATTCGCAACCCACAATATAACAGAGGATATTGGGACGTGGTTTGGAACCGCCCAAATAGAGGTAGTGCCACTGACAGAGTAAGGGCGACGAATTTCAAAGTGATTACGGCCACCGCCGACCAAATAGAGCTTTCATTCACCAAAACATGGAATCCTAATTCCCACTCTTCCTGCCCTTTGAACATAGACAAAAGGTATATTCTCCGACGGGGCGATTCTGGGTTCTATGCATATGCCATATTTGAACGCCTTGATGGATGGCCTCAAATTGACGTTGATCAGATTCGAATTGTCTTCAAAATTCTAGGGAAAAAATTTCATTACATGGTGGTATCGGACGACAGGCAGAGGATCATGCCAACGGCAAGGGACCGTGAGACCGGGCATCCTCTGGCTTATCGGGAGGCGGTTCTCTTAACCCAACCCATCAATTCTAAACTCAAAGGGGAGGTGGACGATAAGTACCAGTACTCCCTAGAGAATATGGAGAATAAGGTTCATGGATGGGAGTCGATGAACCCACACGTGGGGTTCTGGATGATCACGCCCAGTGATGAGTTCCGCACGGCGGGGCCCGTCAAGCAAGATCTTACTTCCCACGTTGGCCCCACCACCCTCTCCATGTTCGTGAGTACGCATTACGCGGGTAAAGAAGTTTCCATGAGATTTGGAGTGGGAGAGGCATGGAAGAAGGTATTCGGACCGGTCTTCATTTATCTAAACTCGGATCCGGTCGGTTCTGGACCCGGTTCACTTTGGGAAGATGCTAAAAACCAGATGAGGATAGAGACAAGTAAGTGGCCATACAGCTTTGTTGGATCCACAGATTTTCCATCCTCAAACCAAAGAGGAACCGTAAGCGGTCGGTTATTAGTCCGAGATAGACATGCTAAGAAGTGGTTGATGTGGGGCGATTCTGCGTATGTTGGCCTTGCAGCTCCCGGGGAATTGGGGTCTTGGCAAACAGAAAGCAAGGGATATCAGTTTTGGACACGGGCAGATGGGCAAGGATATTTCTCAATTAACAACATTAGGCCTGGAAACTACAATCTATACGCGTGGGTACCTGGTGTCATCGGTGATTACAAGTACGCCAATGACATCACTGTCACGTTGGGGAGTACCACCCGCCTCGGCTTACTCATATACGACCCTCCAAGACAAGGCCCAACTCTGTGGGAGATTGGCGTCCCAGACCGGACAGCCGCCGAGTTCTATATACCGGATCCCCAGCCCACCCTCATGAATCGCTTTTACAACAATTCTGATATCCATACCCCAGATAAGTTTCGACAGTACGGTCTTTGGGAGCGCTACGCCGAATTGTTTCCCCATCAAGATCTAGTCTACAACGTCGCCACCGATGACTACCGCCGACATTGGTTCTTCGCCCATGTCACCAGAGCCACCCGTTTCGGTACCTACCAAGCAACCACGTGGCAGATTGTGTTTCGTCTTCAAGGGCCCAAACAGAGCGGGAACTATATGCTTCGGTTGGCCTTGGCTTCCACTACCGAGGCGGTGGTCGAAATCCGGTTCAACAACCCGTTGGCCAGAGGGGCTCATTTCTCGACCGGGTATTGGGCCTCAGGAAGGGATAACGCCATTGCTAGACATGGGATTCATGGGCTTTATTGGTTATTCAACTTCAAGGTTCCAAGTGGATATTTGGTCGAGGATGAAAACATTATCTATCTTACACAGAGACGACATATGGGACCCTTTCAAGGAGTGATGTACGATTACATACGGTTCGAAGGCGTACAATAA | 2094 | 48.62 | MEKRGKARRQHPYWTWKLGFSAMPLLFLFFSLTLAHNNSSQRLLVINCRRMVRKLVKNNESMLSRDVTLEWENRGQVVMDNGLVRITLSRPEGNVIALKYNALDNLLEIRNPQYNRGYWDVVWNRPNRGSATDRVRATNFKVITATADQIELSFTKTWNPNSHSSCPLNIDKRYILRRGDSGFYAYAIFERLDGWPQIDVDQIRIVFKILGKKFHYMVVSDDRQRIMPTARDRETGHPLAYREAVLLTQPINSKLKGEVDDKYQYSLENMENKVHGWESMNPHVGFWMITPSDEFRTAGPVKQDLTSHVGPTTLSMFVSTHYAGKEVSMRFGVGEAWKKVFGPVFIYLNSDPVGSGPGSLWEDAKNQMRIETSKWPYSFVGSTDFPSSNQRGTVSGRLLVRDRHAKKWLMWGDSAYVGLAAPGELGSWQTESKGYQFWTRADGQGYFSINNIRPGNYNLYAWVPGVIGDYKYANDITVTLGSTTRLGLLIYDPPRQGPTLWEIGVPDRTAAEFYIPDPQPTLMNRFYNNSDIHTPDKFRQYGLWERYAELFPHQDLVYNVATDDYRRHWFFAHVTRATRFGTYQATTWQIVFRLQGPKQSGNYMLRLALASTTEAVVEIRFNNPLARGAHFSTGYWASGRDNAIARHGIHGLYWLFNFKVPSGYLVEDENIIYLTQRRHMGPFQGVMYDYIRFEGVQ | 697 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 6907147 | 6911511 | - | CmoCh03G008910.1 | Cmo03g00891 | 378354 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo03g00891 | 697 | SUPERFAMILY | Galactose mutarotase-like | 76 | 354 | IPR011013 | GO:0003824|GO:0005975|GO:0030246 | |
Cmo03g00891 | 697 | PANTHER | RHAMNOGALACTURONATE LYASE FAMILY PROTEIN | 72 | 695 | - | - | |
Cmo03g00891 | 697 | Gene3D | - | 387 | 488 | - | - | |
Cmo03g00891 | 697 | Gene3D | - | 497 | 693 | - | - | |
Cmo03g00891 | 697 | CDD | RGL4_N | 76 | 351 | - | - | |
Cmo03g00891 | 697 | PANTHER | RHAMNOGALACTURONATE LYASE FAMILY PROTEIN | 72 | 695 | - | - | |
Cmo03g00891 | 697 | SUPERFAMILY | Galactose-binding domain-like | 497 | 694 | IPR008979 | - | |
Cmo03g00891 | 697 | CDD | RGL4_M | 390 | 487 | IPR029413 | - | |
Cmo03g00891 | 697 | Pfam | Rhamnogalacturonate lyase family | 56 | 259 | IPR010325 | - | |
Cmo03g00891 | 697 | Pfam | Polysaccharide lyase family 4, domain II | 413 | 486 | IPR029413 | - | |
Cmo03g00891 | 697 | Pfam | Polysaccharide lyase family 4, domain III | 499 | 692 | IPR029411 | - | |
Cmo03g00891 | 697 | SUPERFAMILY | Starch-binding domain-like | 388 | 488 | IPR013784 | GO:0030246 | |
Cmo03g00891 | 697 | CDD | RGL4_C | 501 | 694 | - | - | |
Cmo03g00891 | 697 | Gene3D | - | 70 | 351 | IPR014718 | GO:0030246 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo03g00891 | Cmo-Chr3:6907147 | Cmo12g00167 | Cmo-Chr12:1101111 | 0 | dispersed | |
Cmo04g00918 | Cmo-Chr4:4613514 | Cmo03g00891 | Cmo-Chr3:6907147 | 0 | transposed | |
Cmo03g00891 | Cmo-Chr3:6907147 | Cmo07g00588 | Cmo-Chr7:2657026 | 0 | wgd | |
Cmo03g00891 | Cmo-Chr3:6907147 | Cmo09g00585 | Cmo-Chr9:2873512 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo03g00891 | K18195 | - | csv:101206696 | 1056.97 |