Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g00891 ATGGAGAAGAGAGGCAAGGCAAGAAGGCAGCACCCATACTGGACATGGAAACTTGGGTTCTCAGCAATGCCGCTCCTTTTCTTATTCTTCAGTTTAACCCTCGCCCACAACAATTCCTCCCAACGGTTACTTGTAATCAATTGCAGAAGAATGGTAAGAAAGTTGGTGAAGAACAATGAATCTATGCTGTCGCGCGATGTAACGTTAGAATGGGAGAATCGTGGACAGGTAGTAATGGACAATGGGTTAGTTCGAATCACTTTATCCAGACCAGAAGGCAACGTTATTGCCCTAAAATACAATGCTCTTGATAACCTACTTGAAATTCGCAACCCACAATATAACAGAGGATATTGGGACGTGGTTTGGAACCGCCCAAATAGAGGTAGTGCCACTGACAGAGTAAGGGCGACGAATTTCAAAGTGATTACGGCCACCGCCGACCAAATAGAGCTTTCATTCACCAAAACATGGAATCCTAATTCCCACTCTTCCTGCCCTTTGAACATAGACAAAAGGTATATTCTCCGACGGGGCGATTCTGGGTTCTATGCATATGCCATATTTGAACGCCTTGATGGATGGCCTCAAATTGACGTTGATCAGATTCGAATTGTCTTCAAAATTCTAGGGAAAAAATTTCATTACATGGTGGTATCGGACGACAGGCAGAGGATCATGCCAACGGCAAGGGACCGTGAGACCGGGCATCCTCTGGCTTATCGGGAGGCGGTTCTCTTAACCCAACCCATCAATTCTAAACTCAAAGGGGAGGTGGACGATAAGTACCAGTACTCCCTAGAGAATATGGAGAATAAGGTTCATGGATGGGAGTCGATGAACCCACACGTGGGGTTCTGGATGATCACGCCCAGTGATGAGTTCCGCACGGCGGGGCCCGTCAAGCAAGATCTTACTTCCCACGTTGGCCCCACCACCCTCTCCATGTTCGTGAGTACGCATTACGCGGGTAAAGAAGTTTCCATGAGATTTGGAGTGGGAGAGGCATGGAAGAAGGTATTCGGACCGGTCTTCATTTATCTAAACTCGGATCCGGTCGGTTCTGGACCCGGTTCACTTTGGGAAGATGCTAAAAACCAGATGAGGATAGAGACAAGTAAGTGGCCATACAGCTTTGTTGGATCCACAGATTTTCCATCCTCAAACCAAAGAGGAACCGTAAGCGGTCGGTTATTAGTCCGAGATAGACATGCTAAGAAGTGGTTGATGTGGGGCGATTCTGCGTATGTTGGCCTTGCAGCTCCCGGGGAATTGGGGTCTTGGCAAACAGAAAGCAAGGGATATCAGTTTTGGACACGGGCAGATGGGCAAGGATATTTCTCAATTAACAACATTAGGCCTGGAAACTACAATCTATACGCGTGGGTACCTGGTGTCATCGGTGATTACAAGTACGCCAATGACATCACTGTCACGTTGGGGAGTACCACCCGCCTCGGCTTACTCATATACGACCCTCCAAGACAAGGCCCAACTCTGTGGGAGATTGGCGTCCCAGACCGGACAGCCGCCGAGTTCTATATACCGGATCCCCAGCCCACCCTCATGAATCGCTTTTACAACAATTCTGATATCCATACCCCAGATAAGTTTCGACAGTACGGTCTTTGGGAGCGCTACGCCGAATTGTTTCCCCATCAAGATCTAGTCTACAACGTCGCCACCGATGACTACCGCCGACATTGGTTCTTCGCCCATGTCACCAGAGCCACCCGTTTCGGTACCTACCAAGCAACCACGTGGCAGATTGTGTTTCGTCTTCAAGGGCCCAAACAGAGCGGGAACTATATGCTTCGGTTGGCCTTGGCTTCCACTACCGAGGCGGTGGTCGAAATCCGGTTCAACAACCCGTTGGCCAGAGGGGCTCATTTCTCGACCGGGTATTGGGCCTCAGGAAGGGATAACGCCATTGCTAGACATGGGATTCATGGGCTTTATTGGTTATTCAACTTCAAGGTTCCAAGTGGATATTTGGTCGAGGATGAAAACATTATCTATCTTACACAGAGACGACATATGGGACCCTTTCAAGGAGTGATGTACGATTACATACGGTTCGAAGGCGTACAATAA 2094 48.62 MEKRGKARRQHPYWTWKLGFSAMPLLFLFFSLTLAHNNSSQRLLVINCRRMVRKLVKNNESMLSRDVTLEWENRGQVVMDNGLVRITLSRPEGNVIALKYNALDNLLEIRNPQYNRGYWDVVWNRPNRGSATDRVRATNFKVITATADQIELSFTKTWNPNSHSSCPLNIDKRYILRRGDSGFYAYAIFERLDGWPQIDVDQIRIVFKILGKKFHYMVVSDDRQRIMPTARDRETGHPLAYREAVLLTQPINSKLKGEVDDKYQYSLENMENKVHGWESMNPHVGFWMITPSDEFRTAGPVKQDLTSHVGPTTLSMFVSTHYAGKEVSMRFGVGEAWKKVFGPVFIYLNSDPVGSGPGSLWEDAKNQMRIETSKWPYSFVGSTDFPSSNQRGTVSGRLLVRDRHAKKWLMWGDSAYVGLAAPGELGSWQTESKGYQFWTRADGQGYFSINNIRPGNYNLYAWVPGVIGDYKYANDITVTLGSTTRLGLLIYDPPRQGPTLWEIGVPDRTAAEFYIPDPQPTLMNRFYNNSDIHTPDKFRQYGLWERYAELFPHQDLVYNVATDDYRRHWFFAHVTRATRFGTYQATTWQIVFRLQGPKQSGNYMLRLALASTTEAVVEIRFNNPLARGAHFSTGYWASGRDNAIARHGIHGLYWLFNFKVPSGYLVEDENIIYLTQRRHMGPFQGVMYDYIRFEGVQ 697
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6907147 6911511 - CmoCh03G008910.1 Cmo03g00891 378354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g00891 697 SUPERFAMILY Galactose mutarotase-like 76 354 IPR011013 GO:0003824|GO:0005975|GO:0030246
Cmo03g00891 697 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 72 695 - -
Cmo03g00891 697 Gene3D - 387 488 - -
Cmo03g00891 697 Gene3D - 497 693 - -
Cmo03g00891 697 CDD RGL4_N 76 351 - -
Cmo03g00891 697 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 72 695 - -
Cmo03g00891 697 SUPERFAMILY Galactose-binding domain-like 497 694 IPR008979 -
Cmo03g00891 697 CDD RGL4_M 390 487 IPR029413 -
Cmo03g00891 697 Pfam Rhamnogalacturonate lyase family 56 259 IPR010325 -
Cmo03g00891 697 Pfam Polysaccharide lyase family 4, domain II 413 486 IPR029413 -
Cmo03g00891 697 Pfam Polysaccharide lyase family 4, domain III 499 692 IPR029411 -
Cmo03g00891 697 SUPERFAMILY Starch-binding domain-like 388 488 IPR013784 GO:0030246
Cmo03g00891 697 CDD RGL4_C 501 694 - -
Cmo03g00891 697 Gene3D - 70 351 IPR014718 GO:0030246
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00891 Cmo-Chr3:6907147 Cmo12g00167 Cmo-Chr12:1101111 0 dispersed
Cmo04g00918 Cmo-Chr4:4613514 Cmo03g00891 Cmo-Chr3:6907147 0 transposed
Cmo03g00891 Cmo-Chr3:6907147 Cmo07g00588 Cmo-Chr7:2657026 0 wgd
Cmo03g00891 Cmo-Chr3:6907147 Cmo09g00585 Cmo-Chr9:2873512 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g00891 K18195 - csv:101206696 1056.97