Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g00892 ATGGGTCGAGGGAAGATTGTGATAAGAAGGATCGATAATTCAGCGAGCAGACAAGTGACCTTCTCCAAGAGGAGGAAGGGACTCATTAAAAAGGCTAAAGAGCTCTCTATTCTCTGCGATGCCGAACTTGCTCTCATTATCTTCTCCAGCTCCGGCAAACAGTATGAATTTGCAAGCACTAGCATAGAGTCGGTAATTGAGAAATATAATAGACGAAAGGAGGAAGATGAACTGCTGTTGAATCCAATTTCTGATGTCAAGTTATGGCAGAAGGAAGTATCAGCTCTAAGGCAACAACTACTTAACTTGCAGGAGAATAATAGGTTTACGGGCATGATTCAAGATTAG 348 41.95 MGRGKIVIRRIDNSASRQVTFSKRRKGLIKKAKELSILCDAELALIIFSSSGKQYEFASTSIESVIEKYNRRKEEDELLLNPISDVKLWQKEVSALRQQLLNLQENNRFTGMIQD 115
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6914599 6916065 + CmoCh03G008920.1 Cmo03g00892 378355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g00892 115 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cmo03g00892 115 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cmo03g00892 115 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cmo03g00892 115 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cmo03g00892 115 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Cmo03g00892 115 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cmo03g00892 115 PANTHER MADS-BOX TRANSCRIPTION FACTOR 23 ISOFORM X1 1 108 - -
Cmo03g00892 115 SUPERFAMILY SRF-like 2 78 IPR036879 GO:0003677|GO:0046983
Cmo03g00892 115 Coils Coil 86 106 - -
Cmo03g00892 115 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Cmo03g00892 115 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Cmo03g00892 115 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 108 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00892 Cmo-Chr3:6914599 Cmo03g01352 Cmo-Chr3:9999265 1.64E-32 dispersed
Cmo18g01160 Cmo-Chr18:11794852 Cmo03g00892 Cmo-Chr3:6914599 3.24E-17 dispersed
Cmo16g00301 Cmo-Chr16:1370498 Cmo03g00892 Cmo-Chr3:6914599 3.62E-48 wgd
Cmo03g00892 Cmo-Chr3:6914599 Cmo09g00587 Cmo-Chr9:2887070 1.47E-28 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9425 PF00319 SRF-TF 3.80E-24 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g00892 K09264 - csv:101206453 186.037