Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g00895 ATGGAGCTCAGTCAACATGGTTTCTTAGAGGAGTTATTAGCTTCCACGCCTTGGTCCTCCTCTTATTCAAATGGCTTCAATGATTTCTTCCAAAATACCTGGAATTTTGGTTGTTTTGATGAAAATCCCCAAATGGGTACCTCTATTTCCCCCCATTTTCCCGCTCTCCAAACTGCTACTGATTTTTCCTTCGCCGATCAACACCTCTACACCAATTTTATCGAAGGCTTTGCGATGCCGGAGCTCGATTCTTCATCGTACACTAGGAATAACGAAACCCCACCATTCGTTTCGCAAGAAGAAATGAGTAATAAGAACAGTGGGTTCCCTCCGGTGGGGATGGAGGAGGAAGAACTTGGGTTTATGGAGGCTGAAGCGGCTCCAAGTGTGTGCAAAGTGGAAATGGAGCAAATGGGTGGGCGTGAAACTAATGATTCCAAAATGGGTGTCGCAGAATCCAGGAAAAGAACCAGTAACAAGGCTAAGAAGATTGAAGGACAGCCCTCCAAGAATTTAATGGCGGAAAGAAGAAGAAGGAAGCGGTTGAATGATCGGCTTTCCATGCTCAGAGCAATAGTCCCTAAAATAAGCAAGATGGATAGAACGTCTATACTTGGAGACACGATCGATTATGTGAAAGAGCTGCTAGAAAGAATCAATAACTTGAAAGAAGAAGATGAATTTGGTTTAGATTCGAATCACGTGGGCTTCAATGCGATCTCCAAGGAAGGGAAGCCCAATGAAGTTCAAGTGAGAAATTCCCCAAAGTTCGATATTGAAAAGAGGGAGAGTAAGACTCGAATCGACATTTGCTGTGCGACGAGGCCAGGGTTATTGCTGTCCACTGTGAACACATTGGAAGCATTGGGGCTTGAGATTCAACAGTGTGTGATTAGCTGCTTCAATGATTTCTCGATGCAAGCTTGTTGTTCAGAGCAGGGAAGCGGTGAGAAAGCAGTGGCAAGCTCAGATGATATAAAGGAGGCACTGTTCAGAAATGCTGGATATGGAGGGAAGTGCTTGTAG 1026 44.64 MELSQHGFLEELLASTPWSSSYSNGFNDFFQNTWNFGCFDENPQMGTSISPHFPALQTATDFSFADQHLYTNFIEGFAMPELDSSSYTRNNETPPFVSQEEMSNKNSGFPPVGMEEEELGFMEAEAAPSVCKVEMEQMGGRETNDSKMGVAESRKRTSNKAKKIEGQPSKNLMAERRRRKRLNDRLSMLRAIVPKISKMDRTSILGDTIDYVKELLERINNLKEEDEFGLDSNHVGFNAISKEGKPNEVQVRNSPKFDIEKRESKTRIDICCATRPGLLLSTVNTLEALGLEIQQCVISCFNDFSMQACCSEQGSGEKAVASSDDIKEALFRNAGYGGKCL 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6930028 6931831 + CmoCh03G008950.1 Cmo03g00895 378358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g00895 341 MobiDBLite consensus disorder prediction 147 167 - -
Cmo03g00895 341 CDD ACT_UUR-ACR-like 266 307 - -
Cmo03g00895 341 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 3 341 - -
Cmo03g00895 341 PANTHER HELIX-LOOP-HELIX, PUTATIVE, EXPRESSED-RELATED 3 341 - -
Cmo03g00895 341 SMART finulus 172 221 IPR011598 GO:0046983
Cmo03g00895 341 Pfam Helix-loop-helix DNA-binding domain 172 215 IPR011598 GO:0046983
Cmo03g00895 341 Gene3D - 167 232 IPR036638 GO:0046983
Cmo03g00895 341 Coils Coil 205 225 - -
Cmo03g00895 341 MobiDBLite consensus disorder prediction 138 167 - -
Cmo03g00895 341 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 166 215 IPR011598 GO:0046983
Cmo03g00895 341 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 169 228 IPR036638 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00895 Cmo-Chr3:6930028 Cmo18g00238 Cmo-Chr18:1579409 1.97E-41 dispersed
Cmo12g00135 Cmo-Chr12:844845 Cmo03g00895 Cmo-Chr3:6930028 1.95E-83 wgd
Cmo03g00895 Cmo-Chr3:6930028 Cmo05g00589 Cmo-Chr5:2916192 2.45E-66 wgd
Cmo03g00895 Cmo-Chr3:6930028 Cmo07g00598 Cmo-Chr7:2685687 0 wgd
Cmo03g00895 Cmo-Chr3:6930028 Cmo09g00594 Cmo-Chr9:2937102 5.23E-82 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9426 PF00010 HLH 1.90E-09 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g00895 - - csv:101205974 582.022