Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g00910 ATGCGCCTTCTTCTTGTTTTCCTCTGTCTTCTCCAACTCCAACTCCACATTCACCATTCTCTTTCTGCTGGTGTTTCTGAGTATCGTGCCCTTCTCTCCCTCAAAACCTCCATTACTGGCGACCCCAAATCCTCTCTCTCTTCCTGGAACGCCTCCACCAGTCACTGTACTTGGTTTGGGGTCACTTGCGATTTCCGTCGCCATGTCATTGCCTTAGACCTCTCTGGTCTCGGCCTTTCCGGTTCCCTTTCCCCTGATGTTGCCTTTTTAAGATTTCTTACTAATCTTTCTCTTGCTGCCAATGAGTTTTCTGGTCCAATCCCGCTGGAGATTTCTTCACTCTCTTACCTTCGGTTCCTTAACCTCTCTAATAATGTGTTCGATGGATCGTTCCCTTCGCGGCTTTCAGAGCTCCAGAATCTGCAGGTTCTTGACTTGTATAATAACAATATGACTGGAGATTTCCCCGTTGTGATCACTGAAATGTTGAGCCTTCGCCATCTGCATTTGGGTGGAAATTTCTTTACCGGACGGATCCCGTCGGAGGTTGGTCGGCTGCAGTCTTTGGAGTACTTGGCGGTTTCCGGTAACGAACTTGGCGGTCCGATACCGCCCGAGATTGGAAACTTGAAGAACCTTCGAGAGCTCTACATTGGCTACTTTAACGCCTACGACGGCGGTATTCCGGCCGAGATTGGGAATTTGTCGGAGTTGGTACGGTTGGACGCTGCGAACTGTGGACTGTCTGGACGGATTCCGCCGGAGCTCGGAAAGCTGAAGAGCCTTGATACTCTGTTTCTCCAAGTTAATGCTCTATCTGGGCCACTGACGCCGGAGATTGGAGAGTTGAACAACTTGAAGTCGTTGGATTTGTCGAACAATATGCTTGTGGGTGAGATTCCCGTATCGTTCGCCGAGTTGAAGAACTTGACGCTGTTGAATCTGTTTAGAAACAAGCTACATGGAGGGATTCCTTCCTTTATTGGCGACTTGCCGAAGCTGGAGGTGTTGCAGTTATGGGAGAATAATTTCACGGAAGCGATTCCACAGAACCTGGGGAAGAACGGAATGCTTCGGATTCTGGATATTTCTTCCAACAAGCTGACTGGAACTCTCCCTCCTGATGTGTGCTACGGTAATCGGCTTCAAACTCTGATCGCATTGAGCAATTTTTTGTTCGGTCCGATTCCAGAATCGCTAGGCAAATGCGTTTCACTTAATCGTATTCGTATGGGGGAAAATTTTCTCAATGGATCCATTCCGAAGGGGCTTCTGAGTCTGCCCAAGCTCTCTCAGGTGGAGTTACAGGACAATCTTCTCTCCGGCGAATTCCCAATAACCGACTCAATCTCAAAGAATCTCGGCCAGATTAGTCTCTCGAACAACCGACTCACCGGATCGATTCCACCTACAATCGCCAACTTCTCCGGCGTCCAGAAACTACTTCTCGACGGAAACAAGTTCTCCGGTCAAATCCCACCTGAGATTGGGCGGTTACAGCAACTTTCGAAGATTGATTTCAGTAACAATAAGTTATCGGGTCCAATCGCGCCGGAGATTAGCCAATGCAAGCTTCTAACCTTCGCCGATCTCAGTCGAAACGAGCTCTCGGGAGAAATTCCGATCGAGATTACCAGTATGAGGATATTAAATTACCTGAATCTCTCAAGAAACCATTTAGTCGGCGGAATCCCTGCTTCCATAGCCAGAATGCAGAGTTTAACCTCTGTGGATTTCTCATACAACAACCTCTCTGGTTTAGTTCCGGTAACTGGGCAATTCAGTTACTTCAATTATACTTCGTTTGTGGGCAATCCCGATCTCTGCGGACCATATTTGGGGCCATGCAAAGATGGGGTTGCCAATAGCAATTACCAACAACGCTTAAAGGGCCCTCTCTTTGCTTCCCTCAAGCTCCTCCTTGTAATTGGTCTGCTTCTTTGCTCAATTGCATTTGCAGTTGCTGCCATCATCAAAGCTAGATCGCTAAAGAAAGCCAGTGAGTCTCGGGCTTGGAAATTAACATCCTTCCAACGCCTAGATTACACAGTTGATGATGTTCTTGATTGCTTGAAAGAGGATAACATTATTGGAAAAGGAGGGGGTGGCATTGTCTATAAAGGGGTGATGCCAAGTGGTGACCATGTCGCCGTCAAAAGGCTGCCAGCGATGAGCCGTGGATCGTCCCACGACCATGGATTCAACGCTGAGATACAAACTCTTGGGAGGATTCGACACCGACATATCGTTAGACTATTGGGGTTTTGTTCAAACCATGAGACTAATCTTTTGATTTATGAGTATATGCCTAACGGGAGCTTGGGGGAAGTTCTTCATGGCAAAAAAGGGGGTCACCTTCAGTGGGATACAAGGTACAAGATTGCTATTGAAGCCGCTAAAGGGCTTTGCTATCTCCACCACGATTGCTCGCCACTCATTGTTCATCGCGATGTGAAATCAAACAACATACTTCTTGACACTAATTTTGAAGCTCACGTCGCTGATTTTGGTCTGGCCAAGTTCTTACAGGATTCCGGCACTTCTGAGTGCATGTCTGCTATTGCTGGTTCTTATGGATATATTGCCCCAGAATATGCCTACACGCTAAAAGTCGATGAGAAGAGTGATGTATATAGTTTTGGAGTCGTCTTGTTGGAGCTCGTTAGTGGAAGAAAACCGGTCGGAGAATTTGGTGATGGTGTGGACATAGTTCAATGGGTTAGAAAAATGACAGACTCAAACAAGGAAGAGGTAGTGAAAATCCTTGATCCAAGGCTCTCCTCCATTCCTCGCCACGAAGTGATGCACGTCTTCTACGTCGCAATGCTGTGCGTTGAAGAACAGGCGGTAGAGCGCCCGACAATGCGAGAAGTGATCCAAATCCTATCGGAGATTCCACAGCCACCATGTTCAAAACGGGAAGACTCAACACTCCCCAACTCCTCACCACCACCACCAACACCAGCATTAGCCGCCGCATTAGACATTCAAACAACAGGACCCGAGAACAAAAAAGACCAGCAGCAGCCGCCAGCAGATCTTCTTAGCACTTGA 3054 47.58 MRLLLVFLCLLQLQLHIHHSLSAGVSEYRALLSLKTSITGDPKSSLSSWNASTSHCTWFGVTCDFRRHVIALDLSGLGLSGSLSPDVAFLRFLTNLSLAANEFSGPIPLEISSLSYLRFLNLSNNVFDGSFPSRLSELQNLQVLDLYNNNMTGDFPVVITEMLSLRHLHLGGNFFTGRIPSEVGRLQSLEYLAVSGNELGGPIPPEIGNLKNLRELYIGYFNAYDGGIPAEIGNLSELVRLDAANCGLSGRIPPELGKLKSLDTLFLQVNALSGPLTPEIGELNNLKSLDLSNNMLVGEIPVSFAELKNLTLLNLFRNKLHGGIPSFIGDLPKLEVLQLWENNFTEAIPQNLGKNGMLRILDISSNKLTGTLPPDVCYGNRLQTLIALSNFLFGPIPESLGKCVSLNRIRMGENFLNGSIPKGLLSLPKLSQVELQDNLLSGEFPITDSISKNLGQISLSNNRLTGSIPPTIANFSGVQKLLLDGNKFSGQIPPEIGRLQQLSKIDFSNNKLSGPIAPEISQCKLLTFADLSRNELSGEIPIEITSMRILNYLNLSRNHLVGGIPASIARMQSLTSVDFSYNNLSGLVPVTGQFSYFNYTSFVGNPDLCGPYLGPCKDGVANSNYQQRLKGPLFASLKLLLVIGLLLCSIAFAVAAIIKARSLKKASESRAWKLTSFQRLDYTVDDVLDCLKEDNIIGKGGGGIVYKGVMPSGDHVAVKRLPAMSRGSSHDHGFNAEIQTLGRIRHRHIVRLLGFCSNHETNLLIYEYMPNGSLGEVLHGKKGGHLQWDTRYKIAIEAAKGLCYLHHDCSPLIVHRDVKSNNILLDTNFEAHVADFGLAKFLQDSGTSECMSAIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELVSGRKPVGEFGDGVDIVQWVRKMTDSNKEEVVKILDPRLSSIPRHEVMHVFYVAMLCVEEQAVERPTMREVIQILSEIPQPPCSKREDSTLPNSSPPPPTPALAAALDIQTTGPENKKDQQQPPADLLST 1017
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6986445 6990748 + CmoCh03G009100.1 Cmo03g00910 378373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g00910 1017 Pfam Leucine Rich Repeat 285 306 IPR001611 GO:0005515
Cmo03g00910 1017 Pfam Leucine Rich Repeat 164 182 IPR001611 GO:0005515
Cmo03g00910 1017 Gene3D Ribonuclease Inhibitor 180 236 IPR032675 -
Cmo03g00910 1017 Gene3D Ribonuclease Inhibitor 243 355 IPR032675 -
Cmo03g00910 1017 SMART serkin_6 691 961 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo03g00910 1017 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 3 974 - -
Cmo03g00910 1017 SMART LRR_typ_2 499 523 IPR003591 -
Cmo03g00910 1017 SMART LRR_typ_2 331 355 IPR003591 -
Cmo03g00910 1017 SMART LRR_typ_2 162 186 IPR003591 -
Cmo03g00910 1017 SMART LRR_typ_2 283 306 IPR003591 -
Cmo03g00910 1017 SMART LRR_typ_2 571 594 IPR003591 -
Cmo03g00910 1017 SMART LRR_typ_2 356 379 IPR003591 -
Cmo03g00910 1017 Pfam Protein tyrosine and serine/threonine kinase 693 962 IPR001245 GO:0004672|GO:0006468
Cmo03g00910 1017 SUPERFAMILY Protein kinase-like (PK-like) 687 993 IPR011009 -
Cmo03g00910 1017 ProSiteProfiles Protein kinase domain profile. 691 965 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo03g00910 1017 Pfam Leucine rich repeat N-terminal domain 27 64 IPR013210 -
Cmo03g00910 1017 ProSitePatterns Protein kinases ATP-binding region signature. 697 719 IPR017441 GO:0005524
Cmo03g00910 1017 Gene3D Transferase(Phosphotransferase) domain 1 769 977 - -
Cmo03g00910 1017 Gene3D Ribonuclease Inhibitor 25 179 IPR032675 -
Cmo03g00910 1017 ProSitePatterns Serine/Threonine protein kinases active-site signature. 813 825 IPR008271 GO:0004672|GO:0006468
Cmo03g00910 1017 MobiDBLite consensus disorder prediction 966 1017 - -
Cmo03g00910 1017 MobiDBLite consensus disorder prediction 1000 1017 - -
Cmo03g00910 1017 SUPERFAMILY L domain-like 300 617 - -
Cmo03g00910 1017 Gene3D Ribonuclease Inhibitor 356 620 IPR032675 -
Cmo03g00910 1017 Gene3D Phosphorylase Kinase; domain 1 656 768 - -
Cmo03g00910 1017 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 3 974 - -
Cmo03g00910 1017 SUPERFAMILY RNI-like 72 393 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00910 Cmo-Chr3:6986445 Cmo16g00796 Cmo-Chr16:4048232 0 dispersed
Cmo03g00910 Cmo-Chr3:6986445 Cmo07g00616 Cmo-Chr7:2771862 0 wgd
Cmo03g00910 Cmo-Chr3:6986445 Cmo09g00612 Cmo-Chr9:3049038 2.27E-150 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74196 PF07714 PK_Tyr_Ser-Thr 1.90E-46 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g00910 - - csv:101219011 1798.87