Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g00920 ATGGGTTTTGATGATCTTTCTAATACAGGCCTTCTACTGGGTTTGGGATTACCGCTTCCCTCCAATCCCGCTCTTCTTTCTCACAAACCCAAGAAGCCAGTAGATTTATTCTCTTTTCCCGCCCCCGAATCCGAGCCCTCCTTGACTTTGGGCCTTTCCACACCCGAGACTTACCCGGTACCTGCCCCTGAAACGGCTGATTTATGTCGTCAACCCTCGCCTCACAGTGCGATTTCTTCCTTCTCCGGCGGCAGGGTGAAGCGTGAAAGAGATGTTTCCGGTGAAGATATTGAAGAAGAGAAAGCTTGTTCTCGAGTCAGTGATGAAGACGAAGATGGTTCTATTGCTAGAAAAAAGCTTAGGCTAACTAAAGAACAATCTGCCCTCTTGGAGGACAGCTTCAAACTTCATAGCACCCTCAACCCTAAGCAAAAGCAGGCCTTAGCCAGAGAGTTAAATCTCCGGCCTCGACAAGTTGAAGTTTGGTTCCAGAATAGGAGAGCCAGGACGAAGCTGAAGCAAACAGAGGTAGATTGCGAGTTTCTAAAGAGATGCTGCGAAACGCTAACAGACGAAAACAGGAAGCTGCAAAAGGAGCTGCAAGAACTGAAAGCCCTGAAACTAGCGCAGCCCCTGATCATGCAAATGCCGGCGGCGACACTCACCATGTGCCCCTCCTGCGAGCGAACCGGTGGTGGAGCCACCGCCGTTAACGCCGACGGCAATTCCAAGAGCCCATTTTCGATGGCTCTCATGCCCCGGTTTGACAAAGCCTTCACCAAGCCTTCTGCTGCTTGCTAA 801 50.81 MGFDDLSNTGLLLGLGLPLPSNPALLSHKPKKPVDLFSFPAPESEPSLTLGLSTPETYPVPAPETADLCRQPSPHSAISSFSGGRVKRERDVSGEDIEEEKACSRVSDEDEDGSIARKKLRLTKEQSALLEDSFKLHSTLNPKQKQALARELNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCETLTDENRKLQKELQELKALKLAQPLIMQMPAATLTMCPSCERTGGGATAVNADGNSKSPFSMALMPRFDKAFTKPSAAC 266
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7019514 7021011 - CmoCh03G009200.1 Cmo03g00920 378383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g00920 266 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT22 1 266 - -
Cmo03g00920 266 MobiDBLite consensus disorder prediction 84 110 - -
Cmo03g00920 266 SUPERFAMILY Homeodomain-like 110 174 IPR009057 -
Cmo03g00920 266 SMART halz 173 216 IPR003106 GO:0006355|GO:0043565
Cmo03g00920 266 ProSiteProfiles 'Homeobox' domain profile. 113 173 IPR001356 GO:0003677
Cmo03g00920 266 MobiDBLite consensus disorder prediction 37 110 - -
Cmo03g00920 266 Coils Coil 179 209 - -
Cmo03g00920 266 CDD homeodomain 117 174 IPR001356 GO:0003677
Cmo03g00920 266 Pfam Homeodomain 117 171 IPR001356 GO:0003677
Cmo03g00920 266 Gene3D - 111 178 - -
Cmo03g00920 266 SMART HOX_1 115 177 IPR001356 GO:0003677
Cmo03g00920 266 Pfam Homeobox associated leucine zipper 173 207 IPR003106 GO:0006355|GO:0043565
Cmo03g00920 266 ProSitePatterns 'Homeobox' domain signature. 148 171 IPR017970 GO:0000981|GO:0006355
Cmo03g00920 266 PANTHER - 1 266 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00920 Cmo-Chr3:7019514 Cmo04g00907 Cmo-Chr4:4562273 1.24E-100 dispersed
Cmo04g00037 Cmo-Chr4:232439 Cmo03g00920 Cmo-Chr3:7019514 1.97E-50 dispersed
Cmo03g00920 Cmo-Chr3:7019514 Cmo07g00624 Cmo-Chr7:2812539 5.38E-145 wgd
Cmo03g00920 Cmo-Chr3:7019514 Cmo09g00319 Cmo-Chr9:1389769 7.06E-66 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9429 PF00046 Homeodomain 5.40E-16 CL0123 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g00920 K09338 - csv:101218782 419.468