Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g00934 ATGAATAATGTTAATGGCAACAACTGTGACTGGCTAGGCTTCTCTGTCTCCCCTAACGTTAGCATGGAGCTTTCTTCTTCCTCTGCTACTGCTGTCTCCTCTTCAATTCCTGCAAACCTTTTTCACTCCCCATCACAATTTAACTATGGCATTTGCTATGGCGTTGATGGAGAAAATGGTGGCTTTTATTCACCATTGTCTGCCATGCCACTCAAGTCAGATGGCTCATTTTGTTCAATGGAATCACTCAGCAGGCAGCATCCACAAGTGGCGAGTAGCTCTACTCCAAAACTAGAGGATTTCTTCGGTGGCGCAACTATGGGGTCCCATCACTATGAAAGCAATGGCAGGGAAGCTATGGCTCTCAGCCTCGACAGCATTTTTTGCCATCAAAACCCAACTCATGAGCCCAACAACCAACCCTTTGCGCATTTCTCATCCTTGAGAAGCCGTGAAGGGATGCTTCAAGACTCGAAGGTAATCCTGCCTGATGGGTGCAATCTGCAGCAGCAGCAGCACCCACCAGCAGTGATAGAGACTAAGAATTCTGGTCTGAATTGGGCTGTTCCTAGGAACTATGCAGTCGCTAATAATGGTTCGTTCGAGCAGAAGATGGTGAGTTTCATGAGTGAAAATGGTGGAGAATCTGGTCCCATTAATGCCATGGCTTATGGAGATTTACATTCATTGAGCTTGTCCATGACTATGAGCCCTAGCTCTCAGTCAAGCTGTGTTACAGCCACACAGCATGCTTCACCTGCCCTGGCAGACTGTTCTGCTGTGGATACAAAGAAAAGAGGCCATGAGAAGCTTGATCAGAAGCAAATTGTTCATAGGAAGTCTTTAGACACTTTTGGACAGAGAACCTCCCAGTACAGAGGGGTTACAAGGCACAGATGGACGGGTAGGTATGAAGCACATTTGTGGGATAACAGTTGCAAGAAAGAAGGTCAAAGCAGGAAGGGAAGGCAAGTGTACCTTGGAGGTTATGATATGGAAGAAAAAGCCGCCAGAGCTTATGATCTTGCTGCACTCAAGTATTGGGGACCCTCCACCCATATCAACTCTCCTGTGGAGAACTATCAGAAAGAATTAGAGGAAATGAAAAACATGAGCAGGCAGGAATATGTCGCTCACCTCAGAAGAAGAAGCAGTGGATTCTCAAGAGGAGCCTCAATTTACAGAGGCGTAACAAGACATCATCAACATGGAAGATGGCAGGCTCGGATTGGGCGAGTTGCTGGTAACAAAGATCTGTATCTTGGGACATTCAGTACTCAAGAGGAAGCAGCCGAAGCCTATGACATAGCAGCCATCAAATTTCGAGGAATGAATGCGGTTACTAATTTCAATATCACGAGGTATGATGTGGAGCGGATCATTGCAAGCAATACCCTTCTTAGTGGCGATCTAGCTAAGAGAAAGCAGCAGCCTGAGTTTGATAATGAATCACTTAGACAAACCCCTCCTACTCACAACAGCAATTCAGAAGCTCTTCATTTGCCCACTCAGAGTAATCAAAGTGAATCAGAATGGAAGATGGCTCTTTATCAGTCGTCGCAACAGCTCATTCCAAAACCACGATTGCCGTCTGCTATAACCGATGATGGATCACAACTCGGAGTCGAAGACTCGGCAAGAATGGGAGCTCATTTCTCCAATGCATCTTCAATTGTGACCAGCTGCAGCTTTAGCAGCTCGAGGGAGGAGAGTCCAGACAAGACGAGCCTTTCAATGGTGTTCGGAATGCCTCAATCGACGTCTAAGCCATTTGCTACCTCTGGTAGTAATATGAACTCCTCCTCCTGGATTGCATCTGCCCAGCAGTTGAGGGCAGCAAATTGTATGAGCCAGTTGCCAGTGTTTGCTGCCTGGTCTGATAGTTGA 1887 46.58 MNNVNGNNCDWLGFSVSPNVSMELSSSSATAVSSSIPANLFHSPSQFNYGICYGVDGENGGFYSPLSAMPLKSDGSFCSMESLSRQHPQVASSSTPKLEDFFGGATMGSHHYESNGREAMALSLDSIFCHQNPTHEPNNQPFAHFSSLRSREGMLQDSKVILPDGCNLQQQQHPPAVIETKNSGLNWAVPRNYAVANNGSFEQKMVSFMSENGGESGPINAMAYGDLHSLSLSMTMSPSSQSSCVTATQHASPALADCSAVDTKKRGHEKLDQKQIVHRKSLDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQSRKGRQVYLGGYDMEEKAARAYDLAALKYWGPSTHINSPVENYQKELEEMKNMSRQEYVAHLRRRSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGMNAVTNFNITRYDVERIIASNTLLSGDLAKRKQQPEFDNESLRQTPPTHNSNSEALHLPTQSNQSESEWKMALYQSSQQLIPKPRLPSAITDDGSQLGVEDSARMGAHFSNASSIVTSCSFSSSREESPDKTSLSMVFGMPQSTSKPFATSGSNMNSSSWIASAQQLRAANCMSQLPVFAAWSDS 628
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7088777 7092487 - CmoCh03G009340.1 Cmo03g00934 378397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g00934 628 Pfam AP2 domain 393 443 IPR001471 GO:0003700|GO:0006355
Cmo03g00934 628 Pfam AP2 domain 291 349 IPR001471 GO:0003700|GO:0006355
Cmo03g00934 628 SUPERFAMILY DNA-binding domain 392 452 IPR016177 GO:0003677
Cmo03g00934 628 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 8 626 - -
Cmo03g00934 628 SUPERFAMILY DNA-binding domain 290 357 IPR016177 GO:0003677
Cmo03g00934 628 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT 8 626 - -
Cmo03g00934 628 CDD AP2 392 453 IPR001471 GO:0003700|GO:0006355
Cmo03g00934 628 ProSiteProfiles AP2/ERF domain profile. 291 357 IPR001471 GO:0003700|GO:0006355
Cmo03g00934 628 ProSiteProfiles AP2/ERF domain profile. 393 451 IPR001471 GO:0003700|GO:0006355
Cmo03g00934 628 MobiDBLite consensus disorder prediction 472 505 - -
Cmo03g00934 628 Gene3D AP2/ERF domain 290 359 IPR036955 GO:0003700|GO:0006355
Cmo03g00934 628 Gene3D AP2/ERF domain 393 453 IPR036955 GO:0003700|GO:0006355
Cmo03g00934 628 SMART rav1_2 393 457 IPR001471 GO:0003700|GO:0006355
Cmo03g00934 628 SMART rav1_2 291 363 IPR001471 GO:0003700|GO:0006355
Cmo03g00934 628 CDD AP2 290 358 IPR001471 GO:0003700|GO:0006355
Cmo03g00934 628 MobiDBLite consensus disorder prediction 482 505 - -
Cmo03g00934 628 PRINTS Ethylene responsive element binding protein signature 292 303 IPR001471 GO:0003700|GO:0006355
Cmo03g00934 628 PRINTS Ethylene responsive element binding protein signature 433 453 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00934 Cmo-Chr3:7088777 Cmo05g00837 Cmo-Chr5:5236754 9.18E-116 dispersed
Cmo01g01825 Cmo-Chr1:13364902 Cmo03g00934 Cmo-Chr3:7088777 1.63E-30 wgd
Cmo12g00550 Cmo-Chr12:3388854 Cmo03g00934 Cmo-Chr3:7088777 5.17E-07 wgd
Cmo03g00934 Cmo-Chr3:7088777 Cmo05g00125 Cmo-Chr5:542544 2.99E-147 wgd
Cmo03g00934 Cmo-Chr3:7088777 Cmo07g00637 Cmo-Chr7:2876799 0 wgd
Cmo03g00934 Cmo-Chr3:7088777 Cmo09g00310 Cmo-Chr9:1336180 1.60E-29 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9431 PF00847 AP2 1.20E-13 CL0081 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g00934 K09285 - csv:101203323 1123.23