Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g00951 ATGGTGTACGCTACAAATGCTGCAAAAATTGTTGCAGTGTCGAGTGGACATTTGCAAATGGGTGCGCCAAAGCAAAAATGGACAGCTGAAGAAGAAGCTGCCCTTAAAGCAGGAGTGATCAAGCATGGAGCAGGCAAATGGCGCACAATACTCACGGATCCTGAGTTCAGCTCAATTTTGCATCAACGCTCAAATGTGGATCTCAAGGATAAGTGGAGAAATATAAATGTTACTGCAATATGGGGGTCTAGGCAAAAAGCCAAGCTCGCACTTAAAAAGAATTCTTTGGCCCTAAAACATCATGATAATCCTATGGCTCTAAGCACCGTGCTTCAGAATGAGGAGATTGTTGACGCTAAGCCACTTGCAATTTCGAATGGAACAACTCGCACTAATGGCCCAAAAGAGCCACTAGCAAGATTGGACAGACTTATATCAGAGGCAATTAACAACTTAAAGGAGCCAAGAGGTTCTGACCGGGCTGCAATTGCTCTGTACATAGAGGAACATTACTGGGCCCCACCAAACCTTAAAAAACTCCTTTCAACAAAATTAAAGCATATGACTGCAAATGGAAAGTTGATAAAGGTAAAGCATAAGTACAGAATTGCTCCAAGTTCTGCCTTATCTGGAAGAAGAAATGTTCCATTGTTACTCCTTGAGAACAAGCACTTGGATTCTTCAAAGGCCGAGAAGAGTGAAGTCAAAATCATCACTAAATCCCAGGTTGACTCGGAACTTTCAAAGATGAAGGTAATGACTGCAGAGGAAGCAGCTATAGCTGCTGCTCGTGCAGTAGCTGAGGCAGAGGCTGCCATTGCAGAGGCTGAAAGGGCAGCAAGGGAAGCAGAAGAAGCAGAGGCTGAAGCTGAATCAGCACAAGTTTTTGCTGAAGCAGCAATGAAGGCGTTGGAGTGCAGAACATTCCCTAGTAGAAGTCCTGTTCAGAAAGTTCTTCTCCAAGATAACAAAACTTTGCAATGA 984 43.8 MVYATNAAKIVAVSSGHLQMGAPKQKWTAEEEAALKAGVIKHGAGKWRTILTDPEFSSILHQRSNVDLKDKWRNINVTAIWGSRQKAKLALKKNSLALKHHDNPMALSTVLQNEEIVDAKPLAISNGTTRTNGPKEPLARLDRLISEAINNLKEPRGSDRAAIALYIEEHYWAPPNLKKLLSTKLKHMTANGKLIKVKHKYRIAPSSALSGRRNVPLLLLENKHLDSSKAEKSEVKIITKSQVDSELSKMKVMTAEEAAIAAARAVAEAEAAIAEAERAAREAEEAEAEAESAQVFAEAAMKALECRTFPSRSPVQKVLLQDNKTLQ 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7151498 7157358 + CmoCh03G009510.1 Cmo03g00951 378414

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g00951 327 ProSiteProfiles Myb-like domain profile. 24 76 IPR001005 -
Cmo03g00951 327 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 24 80 IPR017930 -
Cmo03g00951 327 PANTHER TELOMERE REPEAT-BINDING FACTOR 2 20 308 - -
Cmo03g00951 327 PANTHER SINGLE MYB HISTONE 4 20 308 IPR044597 GO:0003691
Cmo03g00951 327 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 137 205 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cmo03g00951 327 SMART sant 23 78 IPR001005 -
Cmo03g00951 327 SMART h15plus2 135 200 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cmo03g00951 327 SUPERFAMILY Winged helix DNA-binding domain 135 213 IPR036390 -
Cmo03g00951 327 Pfam Myb-like DNA-binding domain 24 75 IPR001005 -
Cmo03g00951 327 Pfam linker histone H1 and H5 family 142 199 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cmo03g00951 327 Gene3D - 19 78 - -
Cmo03g00951 327 SUPERFAMILY Homeodomain-like 21 84 IPR009057 -
Cmo03g00951 327 CDD SANT_TRF 25 76 - -
Cmo03g00951 327 Gene3D - 135 213 IPR036388 -
Cmo03g00951 327 Coils Coil 259 296 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g00951 K09422 MYBP; transcription factor MYB, plant - csv:101202913 479.174
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00951 Cmo-Chr3:7151498 Cmo04g00473 Cmo-Chr4:2362687 3.94E-73 dispersed
Cmo16g00332 Cmo-Chr16:1518183 Cmo03g00951 Cmo-Chr3:7151498 2.57E-75 wgd
Cmo03g00951 Cmo-Chr3:7151498 Cmo07g00654 Cmo-Chr7:2944985 1.56E-171 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo16g00332 CST 1 325 Single Myb Histone (SMH) Gene Family AT1G49950 60.8 2.6e-75 279.6
Cmo04g00473 CST 1 328 Single Myb Histone (SMH) Gene Family AT1G49950 55.4 4.5e-67 252.3
Cmo03g00951 . 20 266 Single Myb Histone (SMH) Gene Family AT1G49950 53.9 3.0e-63 239.6
Cmo07g00654 . 1 247 Single Myb Histone (SMH) Gene Family AT1G49950 51.6 5.3e-60 228.8
Cmo07g00654 . 1 250 Single Myb Histone (SMH) Gene Family AT5G67580 53.7 2.6e-67 253.1
Cmo03g00951 . 20 266 Single Myb Histone (SMH) Gene Family AT5G67580 53.2 3.2e-65 246.1
Cmo07g00654 . 1 249 Single Myb Histone (SMH) Gene Family AT3G49850 51.4 3.7e-58 222.6
Cmo03g00951 . 20 266 Single Myb Histone (SMH) Gene Family AT3G49850 50.2 1.6e-56 217.2
Cmo01g00058 . 1 277 Single Myb Histone (SMH) Gene Family AT1G17520 51.9 1.4e-70 263.8
Cmo14g01287 . 1 277 Single Myb Histone (SMH) Gene Family AT1G17520 51.4 7.9e-69 258.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003466 1 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 2 1 4 4 0 45
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9435 PF00538 Linker_histone 8.90E-11 CL0123 Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo03g00951 Cmo_Chr03 FPKM 11.591367 11.470337 11.759267 11.295275 2.018436 2.286309 1.813219 0.413143 0.459071 0.14486