Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g00951 ATGGTGTACGCTACAAATGCTGCAAAAATTGTTGCAGTGTCGAGTGGACATTTGCAAATGGGTGCGCCAAAGCAAAAATGGACAGCTGAAGAAGAAGCTGCCCTTAAAGCAGGAGTGATCAAGCATGGAGCAGGCAAATGGCGCACAATACTCACGGATCCTGAGTTCAGCTCAATTTTGCATCAACGCTCAAATGTGGATCTCAAGGATAAGTGGAGAAATATAAATGTTACTGCAATATGGGGGTCTAGGCAAAAAGCCAAGCTCGCACTTAAAAAGAATTCTTTGGCCCTAAAACATCATGATAATCCTATGGCTCTAAGCACCGTGCTTCAGAATGAGGAGATTGTTGACGCTAAGCCACTTGCAATTTCGAATGGAACAACTCGCACTAATGGCCCAAAAGAGCCACTAGCAAGATTGGACAGACTTATATCAGAGGCAATTAACAACTTAAAGGAGCCAAGAGGTTCTGACCGGGCTGCAATTGCTCTGTACATAGAGGAACATTACTGGGCCCCACCAAACCTTAAAAAACTCCTTTCAACAAAATTAAAGCATATGACTGCAAATGGAAAGTTGATAAAGGTAAAGCATAAGTACAGAATTGCTCCAAGTTCTGCCTTATCTGGAAGAAGAAATGTTCCATTGTTACTCCTTGAGAACAAGCACTTGGATTCTTCAAAGGCCGAGAAGAGTGAAGTCAAAATCATCACTAAATCCCAGGTTGACTCGGAACTTTCAAAGATGAAGGTAATGACTGCAGAGGAAGCAGCTATAGCTGCTGCTCGTGCAGTAGCTGAGGCAGAGGCTGCCATTGCAGAGGCTGAAAGGGCAGCAAGGGAAGCAGAAGAAGCAGAGGCTGAAGCTGAATCAGCACAAGTTTTTGCTGAAGCAGCAATGAAGGCGTTGGAGTGCAGAACATTCCCTAGTAGAAGTCCTGTTCAGAAAGTTCTTCTCCAAGATAACAAAACTTTGCAATGA 984 43.8 MVYATNAAKIVAVSSGHLQMGAPKQKWTAEEEAALKAGVIKHGAGKWRTILTDPEFSSILHQRSNVDLKDKWRNINVTAIWGSRQKAKLALKKNSLALKHHDNPMALSTVLQNEEIVDAKPLAISNGTTRTNGPKEPLARLDRLISEAINNLKEPRGSDRAAIALYIEEHYWAPPNLKKLLSTKLKHMTANGKLIKVKHKYRIAPSSALSGRRNVPLLLLENKHLDSSKAEKSEVKIITKSQVDSELSKMKVMTAEEAAIAAARAVAEAEAAIAEAERAAREAEEAEAEAESAQVFAEAAMKALECRTFPSRSPVQKVLLQDNKTLQ 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7151498 7157358 + CmoCh03G009510.1 Cmo03g00951 378414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g00951 327 ProSiteProfiles Myb-like domain profile. 24 76 IPR001005 -
Cmo03g00951 327 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 24 80 IPR017930 -
Cmo03g00951 327 PANTHER TELOMERE REPEAT-BINDING FACTOR 2 20 308 - -
Cmo03g00951 327 PANTHER SINGLE MYB HISTONE 4 20 308 IPR044597 GO:0003691
Cmo03g00951 327 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 137 205 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cmo03g00951 327 SMART sant 23 78 IPR001005 -
Cmo03g00951 327 SMART h15plus2 135 200 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cmo03g00951 327 SUPERFAMILY Winged helix DNA-binding domain 135 213 IPR036390 -
Cmo03g00951 327 Pfam Myb-like DNA-binding domain 24 75 IPR001005 -
Cmo03g00951 327 Pfam linker histone H1 and H5 family 142 199 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cmo03g00951 327 Gene3D - 19 78 - -
Cmo03g00951 327 SUPERFAMILY Homeodomain-like 21 84 IPR009057 -
Cmo03g00951 327 CDD SANT_TRF 25 76 - -
Cmo03g00951 327 Gene3D - 135 213 IPR036388 -
Cmo03g00951 327 Coils Coil 259 296 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00951 Cmo-Chr3:7151498 Cmo04g00473 Cmo-Chr4:2362687 3.94E-73 dispersed
Cmo16g00332 Cmo-Chr16:1518183 Cmo03g00951 Cmo-Chr3:7151498 2.57E-75 wgd
Cmo03g00951 Cmo-Chr3:7151498 Cmo07g00654 Cmo-Chr7:2944985 1.56E-171 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9435 PF00538 Linker_histone 8.90E-11 CL0123 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g00951 K09422 - csv:101202913 479.174