Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo03g00962 | ATGAGTTGCAACGGTTGCCGCGTTCTTCGAAAGGGCTGCAGCGAGTCCTGTATTCTTCGCCCTTGCTTGCAGTGGATTGAGACCTCCGAGGCCCAAGGCCACGCCACTGTCTTCGTCGCCAAGTTCTTCGGCCGCGCCGGCCTTATGTCTTTCATCTCCGCTGTCCCCGAATCTCAGCGACCTTCTTTGTTTCAGTCTTTGTTGTTCGAAGCCTGTGGACGCACTGTTAATCCCGTCAACGGCGCCGTTGGACTTCTTTGGACTGGCAACTGGCATGTTTGTCAAGCCGCCGTTGACACCGTCTTACGAGGCGGCACGTTGCGGCCGATCAACGATTTCCTCGCCGCTGGTTCTCCCAATCTGTCCTCCGACGACACTTCCGAGGCTGAAGTCGCCTGTACCGACATGTGGAAGCTACGAGATTCTTATCCCAATTCACGATTCTCCAACTCCCGATCCAGGCTCTCTCCGAAACGCAAGCGATCCGAGGAATCATCCACCAAGAACCAACTGAACGACCTAAATCTCCGGTTGACGCCTACTTTCGTATCCAAATCAACCCCGCGCGCCGCTACACCGTCGATGAATTCCGAGGAATCCGAGACCACTACGTGCTTCGAGAGTGGCCTGGGGGATCACCATCACTACTATCCAGAAGAAGGAACCGCCCAACGGAAGCTTCTCAATTTGTTCGTCTAA | 699 | 55.08 | MSCNGCRVLRKGCSESCILRPCLQWIETSEAQGHATVFVAKFFGRAGLMSFISAVPESQRPSLFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQAAVDTVLRGGTLRPINDFLAAGSPNLSSDDTSEAEVACTDMWKLRDSYPNSRFSNSRSRLSPKRKRSEESSTKNQLNDLNLRLTPTFVSKSTPRAATPSMNSEESETTTCFESGLGDHHHYYPEEGTAQRKLLNLFV | 232 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 7221792 | 7227983 | + | CmoCh03G009620.1 | Cmo03g00962 | 378425 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo03g00962 | 232 | MobiDBLite | consensus disorder prediction | 146 | 206 | - | - | |
Cmo03g00962 | 232 | MobiDBLite | consensus disorder prediction | 168 | 206 | - | - | |
Cmo03g00962 | 232 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 38 | 1 | 232 | - | - | |
Cmo03g00962 | 232 | Pfam | Lateral organ boundaries (LOB) domain | 2 | 100 | IPR004883 | - | |
Cmo03g00962 | 232 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN | 1 | 232 | - | - | |
Cmo03g00962 | 232 | ProSiteProfiles | LOB domain profile. | 1 | 107 | IPR004883 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo03g00962 | Cmo-Chr3:7221792 | Cmo14g00825 | Cmo-Chr14:4272280 | 8.93E-54 | dispersed | |
Cmo01g01851 | Cmo-Chr1:13487541 | Cmo03g00962 | Cmo-Chr3:7221792 | 1.54E-60 | wgd | |
Cmo03g00962 | Cmo-Chr3:7221792 | Cmo07g00669 | Cmo-Chr7:3018288 | 1.85E-154 | wgd | |
Cmo03g00962 | Cmo-Chr3:7221792 | Cmo09g00275 | Cmo-Chr9:1210913 | 5.43E-61 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
9438 | PF03195 | LOB | 3.30E-25 | No_clan | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo03g00962 | - | - | csv:101206615 | 416.387 |