Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g00962 ATGAGTTGCAACGGTTGCCGCGTTCTTCGAAAGGGCTGCAGCGAGTCCTGTATTCTTCGCCCTTGCTTGCAGTGGATTGAGACCTCCGAGGCCCAAGGCCACGCCACTGTCTTCGTCGCCAAGTTCTTCGGCCGCGCCGGCCTTATGTCTTTCATCTCCGCTGTCCCCGAATCTCAGCGACCTTCTTTGTTTCAGTCTTTGTTGTTCGAAGCCTGTGGACGCACTGTTAATCCCGTCAACGGCGCCGTTGGACTTCTTTGGACTGGCAACTGGCATGTTTGTCAAGCCGCCGTTGACACCGTCTTACGAGGCGGCACGTTGCGGCCGATCAACGATTTCCTCGCCGCTGGTTCTCCCAATCTGTCCTCCGACGACACTTCCGAGGCTGAAGTCGCCTGTACCGACATGTGGAAGCTACGAGATTCTTATCCCAATTCACGATTCTCCAACTCCCGATCCAGGCTCTCTCCGAAACGCAAGCGATCCGAGGAATCATCCACCAAGAACCAACTGAACGACCTAAATCTCCGGTTGACGCCTACTTTCGTATCCAAATCAACCCCGCGCGCCGCTACACCGTCGATGAATTCCGAGGAATCCGAGACCACTACGTGCTTCGAGAGTGGCCTGGGGGATCACCATCACTACTATCCAGAAGAAGGAACCGCCCAACGGAAGCTTCTCAATTTGTTCGTCTAA 699 55.08 MSCNGCRVLRKGCSESCILRPCLQWIETSEAQGHATVFVAKFFGRAGLMSFISAVPESQRPSLFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQAAVDTVLRGGTLRPINDFLAAGSPNLSSDDTSEAEVACTDMWKLRDSYPNSRFSNSRSRLSPKRKRSEESSTKNQLNDLNLRLTPTFVSKSTPRAATPSMNSEESETTTCFESGLGDHHHYYPEEGTAQRKLLNLFV 232
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7221792 7227983 + CmoCh03G009620.1 Cmo03g00962 378425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g00962 232 MobiDBLite consensus disorder prediction 146 206 - -
Cmo03g00962 232 MobiDBLite consensus disorder prediction 168 206 - -
Cmo03g00962 232 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 232 - -
Cmo03g00962 232 Pfam Lateral organ boundaries (LOB) domain 2 100 IPR004883 -
Cmo03g00962 232 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1 232 - -
Cmo03g00962 232 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00962 Cmo-Chr3:7221792 Cmo14g00825 Cmo-Chr14:4272280 8.93E-54 dispersed
Cmo01g01851 Cmo-Chr1:13487541 Cmo03g00962 Cmo-Chr3:7221792 1.54E-60 wgd
Cmo03g00962 Cmo-Chr3:7221792 Cmo07g00669 Cmo-Chr7:3018288 1.85E-154 wgd
Cmo03g00962 Cmo-Chr3:7221792 Cmo09g00275 Cmo-Chr9:1210913 5.43E-61 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9438 PF03195 LOB 3.30E-25 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g00962 - - csv:101206615 416.387