Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g00982 ATGGCCGTGGACCTCATCTCCCACCCCTACCCTCCTCCCTCCACCACCCACAATATGGAACCCAACGCCGTCCAAGAGGCTGCCTCAGGCCTCGAGAGCGTCGAGAAACTCATCCGATTGCTCTCCAATGCGCAACATCACTCCTTACCCTCCTCTACTCAATCCCCCAATTCCACTTCCAATTCTCCCACCGATTTCCCCACCGACTGCCGCGCCGCCGCCGATGCCGCCGTCTCCAAGTTCAAAAAGGTTATTTCTCTCCTCGGCCGGAGCCGCCTCGGCCACGCTCGCTTCAGAAGAGCTCCTCTCCCTCTTCCTCAACCCCAAGTCCTCTACGCCACTCCCATCCAGCAGATCCCACCCCATCGCCATCTCCCCGCCGGCGACCTCGACAACAACGACTCTCTCACTACTAGTCTCAATTTCTCTTATTCCTCCGCCCATAACTCCTTCATCTCCTCCTTGACCGGCGACTGTGATACCAAGCAGCCTTCCTCCTCCTCGCCTTTTCAGATTATCAACCTCTCCCAAGTCTCCTCCGCCGGGAAACCCCCCCTCTCTACTTCTTCCCTTAAGAGAAAGTGTAGCTCCGACAACTTGGGATCCGGCAAGTGCGGCGCTGCTTCTTCCTCCGGCCGATGCCACTGTTCCAAAAAGAGAAAACTGAGAGTGAAGAGGGTGGTGAGGGTTCCGGCGATAAGCTTGAAAATGGCGGATATCCCACCGGACGACTATTCATGGAGGAAATATGGTCAAAAGCCCATTAAAGGCTCTCCACATCCCAGGGGTTATTACAAGTGTAGCAGCGTGAGAGGTTGCCCAGCCCGGAAACACGTAGAACGTGCCGGAGACGATCCGGCGATGCTAGTGGTGACCTACGAAGGAGAACACAATCACACTCTCTCTCTGCCCCAACCCTCCACTCTCATCCTCGAGTCCTCTTAG 945 56.3 MAVDLISHPYPPPSTTHNMEPNAVQEAASGLESVEKLIRLLSNAQHHSLPSSTQSPNSTSNSPTDFPTDCRAAADAAVSKFKKVISLLGRSRLGHARFRRAPLPLPQPQVLYATPIQQIPPHRHLPAGDLDNNDSLTTSLNFSYSSAHNSFISSLTGDCDTKQPSSSSPFQIINLSQVSSAGKPPLSTSSLKRKCSSDNLGSGKCGAASSSGRCHCSKKRKLRVKRVVRVPAISLKMADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERAGDDPAMLVVTYEGEHNHTLSLPQPSTLILESS 314
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7396973 7398553 + CmoCh03G009820.1 Cmo03g00982 378445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g00982 314 MobiDBLite consensus disorder prediction 46 67 - -
Cmo03g00982 314 Pfam WRKY DNA -binding domain 243 299 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo03g00982 314 MobiDBLite consensus disorder prediction 180 213 - -
Cmo03g00982 314 PANTHER WRKY TRANSCRIPTION FACTOR 7-RELATED 14 314 - -
Cmo03g00982 314 SMART WRKY_cls 241 301 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo03g00982 314 MobiDBLite consensus disorder prediction 180 206 - -
Cmo03g00982 314 MobiDBLite consensus disorder prediction 46 68 - -
Cmo03g00982 314 Pfam Plant zinc cluster domain 192 239 IPR018872 -
Cmo03g00982 314 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 14 314 IPR044810 GO:0003700
Cmo03g00982 314 Gene3D WRKY domain 224 302 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cmo03g00982 314 SUPERFAMILY WRKY DNA-binding domain 238 300 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cmo03g00982 314 ProSiteProfiles WRKY domain profile. 236 302 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo03g00982 Cmo20g00978 CCT
Cmo02g00504 Cmo03g00982 CCT
Cmo03g00982 Cmo20g00978 ECH
Cmo02g00504 Cmo03g00982 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00504 Cmo-Chr2:2757901 Cmo03g00982 Cmo-Chr3:7396973 5.09E-105 dispersed
Cmo03g00982 Cmo-Chr3:7396973 Cmo20g00978 Cmo-Chr20:5451258 8.06E-111 dispersed
Cmo01g01876 Cmo-Chr1:13576602 Cmo03g00982 Cmo-Chr3:7396973 1.42E-107 wgd
Cmo03g00982 Cmo-Chr3:7396973 Cmo07g00703 Cmo-Chr7:3171880 2.11E-28 wgd
Cmo03g00982 Cmo-Chr3:7396973 Cmo09g00247 Cmo-Chr9:1115812 4.64E-110 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9439 PF03106 WRKY 3.50E-26 CL0274 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g00982 - - csv:101214001 449.129