Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo03g00982 | ATGGCCGTGGACCTCATCTCCCACCCCTACCCTCCTCCCTCCACCACCCACAATATGGAACCCAACGCCGTCCAAGAGGCTGCCTCAGGCCTCGAGAGCGTCGAGAAACTCATCCGATTGCTCTCCAATGCGCAACATCACTCCTTACCCTCCTCTACTCAATCCCCCAATTCCACTTCCAATTCTCCCACCGATTTCCCCACCGACTGCCGCGCCGCCGCCGATGCCGCCGTCTCCAAGTTCAAAAAGGTTATTTCTCTCCTCGGCCGGAGCCGCCTCGGCCACGCTCGCTTCAGAAGAGCTCCTCTCCCTCTTCCTCAACCCCAAGTCCTCTACGCCACTCCCATCCAGCAGATCCCACCCCATCGCCATCTCCCCGCCGGCGACCTCGACAACAACGACTCTCTCACTACTAGTCTCAATTTCTCTTATTCCTCCGCCCATAACTCCTTCATCTCCTCCTTGACCGGCGACTGTGATACCAAGCAGCCTTCCTCCTCCTCGCCTTTTCAGATTATCAACCTCTCCCAAGTCTCCTCCGCCGGGAAACCCCCCCTCTCTACTTCTTCCCTTAAGAGAAAGTGTAGCTCCGACAACTTGGGATCCGGCAAGTGCGGCGCTGCTTCTTCCTCCGGCCGATGCCACTGTTCCAAAAAGAGAAAACTGAGAGTGAAGAGGGTGGTGAGGGTTCCGGCGATAAGCTTGAAAATGGCGGATATCCCACCGGACGACTATTCATGGAGGAAATATGGTCAAAAGCCCATTAAAGGCTCTCCACATCCCAGGGGTTATTACAAGTGTAGCAGCGTGAGAGGTTGCCCAGCCCGGAAACACGTAGAACGTGCCGGAGACGATCCGGCGATGCTAGTGGTGACCTACGAAGGAGAACACAATCACACTCTCTCTCTGCCCCAACCCTCCACTCTCATCCTCGAGTCCTCTTAG | 945 | 56.3 | MAVDLISHPYPPPSTTHNMEPNAVQEAASGLESVEKLIRLLSNAQHHSLPSSTQSPNSTSNSPTDFPTDCRAAADAAVSKFKKVISLLGRSRLGHARFRRAPLPLPQPQVLYATPIQQIPPHRHLPAGDLDNNDSLTTSLNFSYSSAHNSFISSLTGDCDTKQPSSSSPFQIINLSQVSSAGKPPLSTSSLKRKCSSDNLGSGKCGAASSSGRCHCSKKRKLRVKRVVRVPAISLKMADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERAGDDPAMLVVTYEGEHNHTLSLPQPSTLILESS | 314 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 7396973 | 7398553 | + | CmoCh03G009820.1 | Cmo03g00982 | 378445 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo03g00982 | 314 | MobiDBLite | consensus disorder prediction | 46 | 67 | - | - | |
Cmo03g00982 | 314 | Pfam | WRKY DNA -binding domain | 243 | 299 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cmo03g00982 | 314 | MobiDBLite | consensus disorder prediction | 180 | 213 | - | - | |
Cmo03g00982 | 314 | PANTHER | WRKY TRANSCRIPTION FACTOR 7-RELATED | 14 | 314 | - | - | |
Cmo03g00982 | 314 | SMART | WRKY_cls | 241 | 301 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cmo03g00982 | 314 | MobiDBLite | consensus disorder prediction | 180 | 206 | - | - | |
Cmo03g00982 | 314 | MobiDBLite | consensus disorder prediction | 46 | 68 | - | - | |
Cmo03g00982 | 314 | Pfam | Plant zinc cluster domain | 192 | 239 | IPR018872 | - | |
Cmo03g00982 | 314 | PANTHER | WRKY TRANSCRIPTION FACTOR 21-RELATED | 14 | 314 | IPR044810 | GO:0003700 | |
Cmo03g00982 | 314 | Gene3D | WRKY domain | 224 | 302 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cmo03g00982 | 314 | SUPERFAMILY | WRKY DNA-binding domain | 238 | 300 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cmo03g00982 | 314 | ProSiteProfiles | WRKY domain profile. | 236 | 302 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo03g00982 | Cmo20g00978 | CCT | |
Cmo02g00504 | Cmo03g00982 | CCT | |
Cmo03g00982 | Cmo20g00978 | ECH | |
Cmo02g00504 | Cmo03g00982 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo02g00504 | Cmo-Chr2:2757901 | Cmo03g00982 | Cmo-Chr3:7396973 | 5.09E-105 | dispersed | |
Cmo03g00982 | Cmo-Chr3:7396973 | Cmo20g00978 | Cmo-Chr20:5451258 | 8.06E-111 | dispersed | |
Cmo01g01876 | Cmo-Chr1:13576602 | Cmo03g00982 | Cmo-Chr3:7396973 | 1.42E-107 | wgd | |
Cmo03g00982 | Cmo-Chr3:7396973 | Cmo07g00703 | Cmo-Chr7:3171880 | 2.11E-28 | wgd | |
Cmo03g00982 | Cmo-Chr3:7396973 | Cmo09g00247 | Cmo-Chr9:1115812 | 4.64E-110 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
9439 | PF03106 | WRKY | 3.50E-26 | CL0274 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo03g00982 | - | - | csv:101214001 | 449.129 |