Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g00985 ATGTGGGATCTGAACGACTGCCCTGATGTGAGGGAGGGGGATGAATCCGAAGCCTGTTCCTCTGCCAAGACCTCCATCGAGGGAGACGGGGATGATGACAAACGGAAAAGGGTGGGATCGGCTTCCAATTCCAGTTGTTCGGCTGCGGAGGAAGAGGAGGAGTTGGAGGAGGAAGAAGAGGAGGAGGAAGGATCCGATGAGGTATTGGGCTCCATGGTCATGCAAATTGACACACAAACCCCAAGCCCTGTAACTCGCCAGTTTTTCCCACTTGAAGACACTGAAATCCCACCTCCCCTTCCACTTCCAACTACTGATTCCGCCTTCCCTCGGGCTCACTGGGTTGGGGTCAAATTTGGCCATCCCGATCCTAATAATAACTCCATCAACCCCAATGACCTCTCCCACCCCATTAAGAAGAGCCGCCGGGGCCCAAGGTCTCGTAGCTCCCAGTATCGCGGGGTCACTTTCTACCGGAGAACCGGCCGCTGGGAGTCTCATATTTGGGATTGTGGAAAGCAGGTTTATCTCGGTGGATTCGATACGGCACATGCAGCTGCTCGTGCTTACGATAGAGCGGCCATTAAATTCCGAGGAGTGGAAGCGGACATAAACTTCAGCATCGAAGATTACGAGGACGACTTAAAACAGATGGGTAATCTAACAAAGGAGGAATTTGTGCATGTTCTTCGCCGACAAAGCACTGGGTTTCCCAGAGGAAGCTCCAAGTATAGAGGTGTAACGCTTCACAAGTGTGGAAGATGGGAGGCTCGAATGGGCCAATTTCTTGGCAAAAAGTATGTTTATCTGGGTTTGTTTGATACCGAGATCGAAGCCGCAAGGGCTTATGATAAAGCTGCAATCAAGTGTAATGGCAAAGAAGCTGTCACCAATTTCGATCCCAGCATTTACGAGAGTGAGCTGAATCCGACAACTGACTCAACTAGCAACTTAGCAGACCACAGTCTTGATTTGAGTCTGGGAAATTCAAGCTCAAAGCAACATGACAGCCCAAATGGTTCCTTAGATCCGCACCATTCTTCTTCAGCTCCTCTACCGATGGAAGCTGATTGGCAACGTAGTCAAGGATTTAGGCCTCCGCAGCTAAATTTGCTGCAAGAATCAAGCAGCGGAGGAGGTAGTGGAAACAAAAATTACAATAATGCACAGAGAGGAAACACTAATAGGCGGCAGGCGGGTGGTGTAGATCAGCCCCACTCCCAGATATTGCTTCACAATCAAAATCATCCAACCTTCAATTATCAAATTCAGTTTCCGGGCAGCAGTAATGGAGGCCGAATAATAGGAAGTGATCTATCACTATCTCTAAGTGATCATCAGAATCAAGTTGTTGAATCGGGGCCATCGCAAGTTCATGCAACTGCTGCAGCATCATCAGGATTCTCTCCCCAGATTAGACCTTCCAAGAATTGGCTGCACAAGAATGGGTTTCATTGTCTCATTAGACCCTCCTAA 1476 48.85 MWDLNDCPDVREGDESEACSSAKTSIEGDGDDDKRKRVGSASNSSCSAAEEEEELEEEEEEEEGSDEVLGSMVMQIDTQTPSPVTRQFFPLEDTEIPPPLPLPTTDSAFPRAHWVGVKFGHPDPNNNSINPNDLSHPIKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFSIEDYEDDLKQMGNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKEAVTNFDPSIYESELNPTTDSTSNLADHSLDLSLGNSSSKQHDSPNGSLDPHHSSSAPLPMEADWQRSQGFRPPQLNLLQESSSGGGSGNKNYNNAQRGNTNRRQAGGVDQPHSQILLHNQNHPTFNYQIQFPGSSNGGRIIGSDLSLSLSDHQNQVVESGPSQVHATAAASSGFSPQIRPSKNWLHKNGFHCLIRPS 491
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7417465 7421011 + CmoCh03G009850.1 Cmo03g00985 378448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g00985 491 MobiDBLite consensus disorder prediction 1 67 - -
Cmo03g00985 491 CDD AP2 242 302 IPR001471 GO:0003700|GO:0006355
Cmo03g00985 491 ProSiteProfiles AP2/ERF domain profile. 151 207 IPR001471 GO:0003700|GO:0006355
Cmo03g00985 491 SUPERFAMILY DNA-binding domain 242 302 IPR016177 GO:0003677
Cmo03g00985 491 MobiDBLite consensus disorder prediction 120 151 - -
Cmo03g00985 491 SUPERFAMILY DNA-binding domain 150 208 IPR016177 GO:0003677
Cmo03g00985 491 MobiDBLite consensus disorder prediction 307 353 - -
Cmo03g00985 491 Pfam AP2 domain 151 199 IPR001471 GO:0003700|GO:0006355
Cmo03g00985 491 Pfam AP2 domain 242 291 IPR001471 GO:0003700|GO:0006355
Cmo03g00985 491 SMART rav1_2 243 306 IPR001471 GO:0003700|GO:0006355
Cmo03g00985 491 SMART rav1_2 151 213 IPR001471 GO:0003700|GO:0006355
Cmo03g00985 491 MobiDBLite consensus disorder prediction 307 346 - -
Cmo03g00985 491 MobiDBLite consensus disorder prediction 1 18 - -
Cmo03g00985 491 MobiDBLite consensus disorder prediction 369 402 - -
Cmo03g00985 491 MobiDBLite consensus disorder prediction 49 67 - -
Cmo03g00985 491 CDD AP2 151 206 IPR001471 GO:0003700|GO:0006355
Cmo03g00985 491 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 471 - -
Cmo03g00985 491 PRINTS Ethylene responsive element binding protein signature 282 302 IPR001471 GO:0003700|GO:0006355
Cmo03g00985 491 PRINTS Ethylene responsive element binding protein signature 244 255 IPR001471 GO:0003700|GO:0006355
Cmo03g00985 491 ProSiteProfiles AP2/ERF domain profile. 243 300 IPR001471 GO:0003700|GO:0006355
Cmo03g00985 491 Gene3D AP2/ERF domain 150 209 IPR036955 GO:0003700|GO:0006355
Cmo03g00985 491 Gene3D AP2/ERF domain 242 301 IPR036955 GO:0003700|GO:0006355
Cmo03g00985 491 Coils Coil 41 68 - -
Cmo03g00985 491 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR TOE3 1 471 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo03g00985 Cmo07g00709 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00985 Cmo-Chr3:7417465 Cmo20g00493 Cmo-Chr20:2325892 8.22E-102 dispersed
Cmo04g01310 Cmo-Chr4:6668332 Cmo03g00985 Cmo-Chr3:7417465 1.42E-10 dispersed
Cmo02g00534 Cmo-Chr2:3034021 Cmo03g00985 Cmo-Chr3:7417465 6.07E-130 transposed
Cmo03g00985 Cmo-Chr3:7417465 Cmo07g00709 Cmo-Chr7:3197835 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9440 PF00847 AP2 3.30E-10 CL0081 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g00985 K09284 - csv:101214724 639.802