Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g00987 ATGGACCATTCCATTTCCAACAATTGCGATCAAAATGCATGTTCTTCTTCGACGTGGACTCTCCCCGCCACCGCCACCGCCGCCGTCCCCTCTTCTTCCCCTCCCGATGAAATCTCTCTGTTTCTGCAACAAATGTTGCTACGTTCCTCTTCCGCCGCTCCCCACTCCTCTCTCCTCTTTTCCTCTCCTTCTCCCTCCATCTTCTCAGAGTTCACCTGCAACATTAGAGCCTTCACCTCTCCAACCCATAACATTTCCCCTCCTTACGGGCTGCCTAATGCAGTTCCTGAAGAGATCTCCCCCGTCGATGCCTCAGAACAATTTGCAAATTTCTCATCTTCCGGTGTAGTACATGATCCCTTGCGCTCTTGTCCCACACCCGCTCCACCCAATGCGTCTTCTATACATGTCGGAGCTAGTGATCACTATGAAAACGATGAGTTTGAATGCGAAAGTGAGGGTCTGGAGGCATTGGTTGAAGACCTGCCTACAAAGCCCAATCCTCGCAGTTCTTCCAAGAGAAGCAGAGCCGCCGAAGTTCATAATATGTCTGAAAAGAGAAGAAGGAGCAGAATTAATGAGAAAATGAAGGCCTTGCAAAATCTGGTCCCCAATTCTAACAAGACTGACAAGGCCTCGATGCTGGACGATGCAATCGAATATCTCAAGCAGCTTCAACTTCAACTTCAGATGCTGTCGATGAGACATGGCTTGAGTTTGCATCCTATGAACTTGCCTGGAAGTTTGCAATATCTCCAACTTTCCCCCATGAGAATGGACTTTGGTGAAGGAAGCAGGTCACTTTCCTCTGACCAAGAGAGACCCAACCAGATCTTTCTCAGTTTGCCTGACCAAAAGGCTGCCTCCATCCATCCTTTCATGTCAGACATTGGAAGAACTAACCCACAAACTCCATTTGAATTGGCCCCGCCCATCCAAACTCACCTAGTCCCCTTTTACTTGAGTGGGTCCCCAAAGTCCAAGAAACTGACAATGCTCGAGCTTTCCATGTTGCATTTGAAGGAGATTTGCAGAGAAGCACTGCGAGACCACCAAGTGAATGCGATCGGCCAATCGGAGACAACTCCCTTCCTGTCATGCCCCAATAACATTCCAGCGCCTCCTGATTTAGAAGAACTACGGAATGGCGTCTCATTGGAACCGTGCATCATTGAAGAAAATCGGTCAGGCTCCATGACCGACCAGCTCTCCAAGCAGACTTCTATTTTTGGCCTACGCTTGTGGGTTGTTCTTGGGGTTTGTGTAGGAGCAGCTTTTGTGCTCTTTCTGTTTCTTATTTCTCTTTGGATCGCCTCTAAACGCTCTCGCAAGAACATTTCTCACAAACCCACAATTCCAATCGTCTCCAAAGAAATCCAAGAGATCAGAATCGAGCAGCCCCTCGCTCAAAACCAAGAAAATAAGCCTAGTAGTAGAGCCCATTTTCAGGTCGAGCCGGAAGTAATCCCCGGAGTTGAGCGCCAAGCGTTGCTTTCGTTGCCTCAGGACGAAGAGCGAGTGAACAGGATTCATATTGAGATCGGGAAGGATCATAGGATTTCATATCCTGAGCGCCTAGGTCGGTCGTCTTCTTCGCACGGCAGTGTAGAAGGCCGATGTGGTGGTGATCAGTTGCCTATGGTGGTGCCTGAAGTTTCCCATTTGGGTTGGGGGCATTGGTACACTCTCAGAGAGCTCGAAGCTTCCACTAACGGCTTCGCCCCCGATAATGTAATCGGTGAGGGTGGGTATGGAATTGTTTATCATGGCATATTGGAGGATGGAACTCAGGTTGCTGTTAAGAATTTACTAAACAATAGGGGACAAGCCGAGAAGGAGTTTAAAGTTGAAGTTGAAGCAATTGGACGAGTCAGACACAAGAACCTAGTTAGATTACTTGGATACTGTGCTGAAGGTGCTCACAGGATGCTTGTATATGAGTACATAAATAATGGAAACTTGGAACAATGGCTTCATGGGGATGTGGGATCTTTCAGCCCTCTTACCTGGGAGATTAGAATGAATATCATTCTTGGAACCGCTAAAGGGCTAGCTTATCTTCACGAAGGATTGGAACCAAAGGTTGTTCACCGGGATATCAAATCAAGCAATATATTACTCGATAAGCAATGGAATTCCAAGGTTTCAGATTTTGGGCTTGCAAAGCTACTATGCTCTGATAATAGCTATATCACAACTCGAGTCATGGGAACATTTGGCTATGTAGCGCCAGAATATGCAAGTACGGGGATGCTAAATGAAAGAAGTGATGTGTATAGTTTTGGAATACTCGTCATGGAAATAATCTCAGGGAGGAACCCTGTCGATTATGGTCGTCCTCCAGATGAGGTACACTTGATCGATTGGCTTAAGAGATTGGTTAGTAACCGTAACCCGGAGGGCGTATTGGATCCAAAGCTTTCTGAAAAGCCTACTTCAAGAGCTTTAAAGCGGGCTCTTCTTGTTGCATTACGCTGTGTGGACCCAAATGCTCAGAAGCGGCCAAAAATGGGACACATTATTCATATGCTTGAAGCTGAAGAGGCTACCTTAAAAGGGGATCGCAAAACTGGAAAGAACCCAGAGAACTCACATTCAGACAATGTCAAGGATGGATTAAGTGAAAGGCAGGCGACAGAATTAGGTGAAACCAACGTGGATGAACAACGAGATACGTGA 2679 46.88 MDHSISNNCDQNACSSSTWTLPATATAAVPSSSPPDEISLFLQQMLLRSSSAAPHSSLLFSSPSPSIFSEFTCNIRAFTSPTHNISPPYGLPNAVPEEISPVDASEQFANFSSSGVVHDPLRSCPTPAPPNASSIHVGASDHYENDEFECESEGLEALVEDLPTKPNPRSSSKRSRAAEVHNMSEKRRRSRINEKMKALQNLVPNSNKTDKASMLDDAIEYLKQLQLQLQMLSMRHGLSLHPMNLPGSLQYLQLSPMRMDFGEGSRSLSSDQERPNQIFLSLPDQKAASIHPFMSDIGRTNPQTPFELAPPIQTHLVPFYLSGSPKSKKLTMLELSMLHLKEICREALRDHQVNAIGQSETTPFLSCPNNIPAPPDLEELRNGVSLEPCIIEENRSGSMTDQLSKQTSIFGLRLWVVLGVCVGAAFVLFLFLISLWIASKRSRKNISHKPTIPIVSKEIQEIRIEQPLAQNQENKPSSRAHFQVEPEVIPGVERQALLSLPQDEERVNRIHIEIGKDHRISYPERLGRSSSSHGSVEGRCGGDQLPMVVPEVSHLGWGHWYTLRELEASTNGFAPDNVIGEGGYGIVYHGILEDGTQVAVKNLLNNRGQAEKEFKVEVEAIGRVRHKNLVRLLGYCAEGAHRMLVYEYINNGNLEQWLHGDVGSFSPLTWEIRMNIILGTAKGLAYLHEGLEPKVVHRDIKSSNILLDKQWNSKVSDFGLAKLLCSDNSYITTRVMGTFGYVAPEYASTGMLNERSDVYSFGILVMEIISGRNPVDYGRPPDEVHLIDWLKRLVSNRNPEGVLDPKLSEKPTSRALKRALLVALRCVDPNAQKRPKMGHIIHMLEAEEATLKGDRKTGKNPENSHSDNVKDGLSERQATELGETNVDEQRDT 892
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7433788 7441947 + CmoCh03G009870.1 Cmo03g00987 378450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g00987 892 ProSitePatterns Protein kinases ATP-binding region signature. 579 601 IPR017441 GO:0005524
Cmo03g00987 892 Gene3D - 171 236 IPR036638 GO:0046983
Cmo03g00987 892 ProSitePatterns Serine/Threonine protein kinases active-site signature. 695 707 IPR008271 GO:0004672|GO:0006468
Cmo03g00987 892 SMART serkin_6 573 844 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo03g00987 892 Gene3D Transferase(Phosphotransferase) domain 1 649 860 - -
Cmo03g00987 892 ProSiteProfiles Protein kinase domain profile. 573 851 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo03g00987 892 SUPERFAMILY Protein kinase-like (PK-like) 554 845 IPR011009 -
Cmo03g00987 892 PANTHER OS01G0323000 PROTEIN 392 885 - -
Cmo03g00987 892 PANTHER RECEPTOR-LIKE KINASE PLANT 392 885 - -
Cmo03g00987 892 Coils Coil 182 202 - -
Cmo03g00987 892 CDD STKc_IRAK 579 845 - -
Cmo03g00987 892 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 173 236 IPR036638 GO:0046983
Cmo03g00987 892 Coils Coil 215 235 - -
Cmo03g00987 892 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 176 225 IPR011598 GO:0046983
Cmo03g00987 892 SMART finulus 182 231 IPR011598 GO:0046983
Cmo03g00987 892 Pfam Helix-loop-helix DNA-binding domain 180 226 IPR011598 GO:0046983
Cmo03g00987 892 Gene3D Phosphorylase Kinase; domain 1 554 648 - -
Cmo03g00987 892 Pfam Protein kinase domain 576 842 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo03g00987 892 CDD bHLH_AtPIF_like 176 238 - -
Cmo03g00987 892 MobiDBLite consensus disorder prediction 172 189 - -
Cmo03g00987 892 MobiDBLite consensus disorder prediction 851 892 - -
Cmo03g00987 892 MobiDBLite consensus disorder prediction 161 189 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo03g00987 Cmo07g00534 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00987 Cmo-Chr3:7433788 Cmo07g00711 Cmo-Chr7:3210008 0 dispersed
Cmo05g00172 Cmo-Chr5:742861 Cmo03g00987 Cmo-Chr3:7433788 4.46E-37 dispersed
Cmo19g00677 Cmo-Chr19:7201711 Cmo03g00987 Cmo-Chr3:7433788 2.44E-165 dispersed
Cmo12g00502 Cmo-Chr12:3086885 Cmo03g00987 Cmo-Chr3:7433788 3.57E-36 wgd
Cmo03g00987 Cmo-Chr3:7433788 Cmo07g00710 Cmo-Chr7:3207130 6.57E-177 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9441 PF00069 Pkinase 4.40E-46 CL0016 Cmo TF
74200 PF00069 Pkinase 4.40E-46 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g00987 - - cmax:111497422 1356.27