Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g01001 ATGAAGGATAACTCCTCCAAACTTATTGTTTTCTTGCTTATAAGCTTCGTTTTCTTGAATCACCTCCTTGTGTCCTCACAACTTGATTATAGATTCTATGATGACTCGTGTCCCAACCTAACAAGAATTGTCAGATATGGCGTCTGGATGGCAGTTTCTAATGATACTAGGATGGCTGCTTCTCTCTTACGCCTTCATTTTCATGATTGCTTTGTCAACGGCTGTGATGGATCATTGTTGCTTGATGACACTAGCTCATTTAAAGGGGAGAAAAATGCATTGCCAAATATGAACTCAGTTCGAGGCTATGAGGTCATTGATGATATAAAGGCTGTTTTAGAGAGAGTCTGCCCATCTGTCGTGTCATGCACTGATATAGTGACTCTAGCAGCTAGAGAGGCTGTCTACCTTGCTGGAGGACCCTTTTGGCCCATTCCACTCGGTCGGCGAGATGGCACGACAGCAAGCGAGAGTGAAGCCAATCAGCTGCCATCACCGTTGGAGCCATTGGAGAATATCATTGCAAAATTCACTAAAAAAGGGCTTGATGTAAAGGATGTTGTCGTGCTCTCAGGTGCACACACTTTCGGGTTAGCTCGGTGCATGATGTTCAAGCATAGACTGTTCAACTTCGATGGCTCTGGCAATCCTGACCCAGAACTAGATGTCATGCTGCGACAGAATTTACAGAGCGTCTGTCCCAATCATGATGACTCCAACGACAAACTGGCCCCCTTGGACACGTACACGATCAGCAGGTTTGACAATGTGTATTACAGAAACTTGGTGAACAAGTTGGGACTTTTGCAGTCAGACCAAGCTCTGATGAAACACAATACAACTGCTCCGTTGGTGGTGAGCTACAGCAGGTACCCATACCTGTTTAACAGGGACTTTGGAGCATCAATGGTGAAGCTGGGCAATACTGGAGTCCTTACAGGCCAAAATGGGGAAATTAGGAAGAATTGCAGGGTGGTGAACTAG 984 45.53 MKDNSSKLIVFLLISFVFLNHLLVSSQLDYRFYDDSCPNLTRIVRYGVWMAVSNDTRMAASLLRLHFHDCFVNGCDGSLLLDDTSSFKGEKNALPNMNSVRGYEVIDDIKAVLERVCPSVVSCTDIVTLAAREAVYLAGGPFWPIPLGRRDGTTASESEANQLPSPLEPLENIIAKFTKKGLDVKDVVVLSGAHTFGLARCMMFKHRLFNFDGSGNPDPELDVMLRQNLQSVCPNHDDSNDKLAPLDTYTISRFDNVYYRNLVNKLGLLQSDQALMKHNTTAPLVVSYSRYPYLFNRDFGASMVKLGNTGVLTGQNGEIRKNCRVVN 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7539228 7540988 - CmoCh03G010010.1 Cmo03g01001 378464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g01001 327 ProSiteProfiles Plant heme peroxidase family profile. 27 327 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo03g01001 327 CDD secretory_peroxidase 27 326 IPR033905 GO:0004601|GO:0042744
Cmo03g01001 327 Pfam Peroxidase 49 290 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo03g01001 327 Gene3D - 31 327 - -
Cmo03g01001 327 PANTHER PEROXIDASE 72-RELATED 12 326 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo03g01001 327 SUPERFAMILY Heme-dependent peroxidases 27 327 IPR010255 GO:0004601|GO:0006979|GO:0020037
Cmo03g01001 327 Gene3D Peroxidase, domain 2 164 306 - -
Cmo03g01001 327 ProSitePatterns Peroxidases proximal heme-ligand signature. 186 196 IPR019793 -
Cmo03g01001 327 ProSitePatterns Peroxidases active site signature. 59 70 IPR019794 GO:0004601
Cmo03g01001 327 PRINTS Haem peroxidase superfamily signature 59 73 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo03g01001 327 PRINTS Haem peroxidase superfamily signature 121 138 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo03g01001 327 PRINTS Haem peroxidase superfamily signature 139 151 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo03g01001 327 PRINTS Haem peroxidase superfamily signature 186 201 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo03g01001 327 PRINTS Haem peroxidase superfamily signature 247 262 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo03g01001 327 PANTHER PEROXIDASE 12 326 - -
Cmo03g01001 327 PRINTS Plant peroxidase signature 37 56 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo03g01001 327 PRINTS Plant peroxidase signature 61 81 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo03g01001 327 PRINTS Plant peroxidase signature 101 114 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo03g01001 327 PRINTS Plant peroxidase signature 120 130 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo03g01001 327 PRINTS Plant peroxidase signature 139 154 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo03g01001 327 PRINTS Plant peroxidase signature 185 197 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo03g01001 327 PRINTS Plant peroxidase signature 245 260 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo03g01001 327 PRINTS Plant peroxidase signature 261 278 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo03g01001 327 PRINTS Plant peroxidase signature 301 314 IPR000823 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00465 Cmo-Chr2:2484099 Cmo03g01001 Cmo-Chr3:7539228 3.81E-112 dispersed
Cmo02g00676 Cmo-Chr2:4288488 Cmo03g01001 Cmo-Chr3:7539228 9.09E-86 dispersed
Cmo02g01253 Cmo-Chr2:7506324 Cmo03g01001 Cmo-Chr3:7539228 4.16E-115 dispersed
Cmo03g01001 Cmo-Chr3:7539228 Cmo15g00169 Cmo-Chr15:782241 9.81E-107 dispersed
Cmo12g00345 Cmo-Chr12:2143584 Cmo03g01001 Cmo-Chr3:7539228 9.65E-83 dispersed
Cmo18g00243 Cmo-Chr18:1606394 Cmo03g01001 Cmo-Chr3:7539228 2.05E-63 dispersed
Cmo03g01001 Cmo-Chr3:7539228 Cmo20g00342 Cmo-Chr20:1675436 1.05E-106 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g01001 K00430 - csv:101218459 589.341