Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g01003 ATGGGTTGGTTGCGCAATATCTCCTTTACTACTTCCTCCATGGTGAGAATTCCGGCCACTGCCACCGGTGACCATTCCCCGACCAGAAAGGCTACTACCAGAGACTCCCACAATCATAATTATCGGGGAGTTGTTTGGCGTTTTGGCGCCTCTAAACATTCCCGCCATAGGAAGCTTCGGAACTTAAGCGGACGTGAGCGTGCCGCTACTTCTTTGGCTAAATGGTCCGATACTACGCCCGAACCCGACTCATTGTCAAGACTGTCGAGTACTTCTGATGAACATGCCGTGCCCTTGCCTCTCCCGGAGGTTCCCCCGATATTTCAGCGTCGTGAAGGGATCTCGAATTCGAATTCTGCTTGTGGAGACGGGGATTGTCCTCTTCCGTCGCCCAAGGATTGGCATGGCCGAGGCGGGGACGACCGTGATGTAGATAGATGTAGAACTGCACCTCCTCTTAAGACTGGAGGCGGGGATTCCATTGGTACTCCGATTAAAAGTATATCTGATTCTGGGGAGAGGCAGAAGAAAGAAGATCAGATTGGGACAAGGTCGTCTGGGAGGGTGAATCAATATGCCAGACGCTTTCCTGAAGCATCTCAGAATAAATTTTGGATTGACGTTCCCTGTAGGAGTGCTCCTACTAGTCCTTTTGCAAGTCCTACACTTAGTCCCCAAAGAAATAGTTCCAGCAACCTTTCAAACTCCCGTCATGTGGCTCCGTTAGAATATCAAGGCTGGTCTGCACCTGAGCTACCATCCTCAGCAATGATGCGGGGGGTTCCTCCTGCATTCTTTGATGGCTCCACTCTTAGCTCTGAGAGTTCTCCCATGCATAGCCCAACAGTTAGAAATCCCCACCAAGATCCCAGAAGTCCAACAGGAGCTTCATCTCCATTGCAAACCAAGATTTCCCTTGAAACACATGCTCAGCGTCGTGAAGGTTCTGGTCCTGTCAGTGTCCACCCATTACCTCTTCCACCTGGAGTACCAATACCTTCATCGTCAATCTCAATGACTTCACCGTCAACCATAATGCCTTCACCATCAACCCCAACGCCTTCACCATCAACCCCAACGCCTCTACCATCAACCCCAATTACAGAAGCTAACACTAAAGCTGAGCCAATCTCAATGAAAAATCAATGGCGGAAAGGAAAACTTATTGGCCGGGGCACATTTGGAAGTGTTTATGTTGCAAGCAACAGAGAAAATGGAGCTTTATGTGCAATGAAGGAAGTTGAATTATTTCACGATGATCCGAAGTCAGCTGAATGTATAAAGCAATTAGAACAGGAAATCAAACTTCTGAGCCAGCTAAAGCATCCAAATATTGTCCAGTACTATGGTAGTGATTTTGTTGAAGATCGATTATATATTTACCTGGAGTATGTTCATCCTGGTTCAATTAATAAATATGTTCGTGAACATTGTGGAGCCATGACAGAATCTGTTGTTCGAAGTTTTACTCGTCACATCCTCTCAGGGTTGGCCTACTTGCACAGCACAAAGACTATACATCGGGACATTAAAGGTGCTAATTTGCTTGTAGACTCTTGTGGGGTTGTCAAGCTTGCTGACTTTGGAATGGCTAAACATCTTACAGGACAAGTTGCTGATCTCTCTTTAAAGGGAAGTCCATACTGGATGGCTCCTGAGCTCCTTCTGTCTGTGAAGCAGAAGGATAACAACTCTGATCTTGCCTTAGCTGTTGATATTTGGAGCCTTGGTTGCACTATTATAGAAATGTTCACTGGCAAGCCACCTTGGAGCGACTATGAAGGGGCTGCAGCTATGTTTAAGGTAATGAGAGACACCCCAACAATACCTGAATCATTATCATATGAAGCCAGAGATTTCTTAAAATGCTGCTTTCAGAGAAATCCTGCAGAGAGGTCGACTGCTGCCATGCTGCTTGAACATCCATTTATAAAAAACTTGCAACATCCAGATGCTCCATCTTGCTATCAGGCCATCGCTAGATCGAGTTTGATGGACAAATGCTACAGCCCAAGTAAACAATATTCGAGTAAACTTGATCAGTCTTCCATGCTTCCAAGCTCACAAAATTCCAAGGGAATGTTAGCGGCCGAGAGGCAAGAGTTGCCTTTTCCCTTGCTCTCCACTTCTCATTTTGTGATTGGCTCACTCTCTCATCATGAAACCTCTGACTTAACTGTAATGTCTCGTCATTCTCCCCGTTCTACCCTTGAGGCTCTTCCAGTACTGTCACCTCCATGCTTAGTTCACAATGTGCACCATCTCAGTTCCCCTGCAAATGCAGTCGGCGTTGTAAATCAAACAAATAAGAAGAGCCACACACTAATTTAG 2331 46.16 MGWLRNISFTTSSMVRIPATATGDHSPTRKATTRDSHNHNYRGVVWRFGASKHSRHRKLRNLSGRERAATSLAKWSDTTPEPDSLSRLSSTSDEHAVPLPLPEVPPIFQRREGISNSNSACGDGDCPLPSPKDWHGRGGDDRDVDRCRTAPPLKTGGGDSIGTPIKSISDSGERQKKEDQIGTRSSGRVNQYARRFPEASQNKFWIDVPCRSAPTSPFASPTLSPQRNSSSNLSNSRHVAPLEYQGWSAPELPSSAMMRGVPPAFFDGSTLSSESSPMHSPTVRNPHQDPRSPTGASSPLQTKISLETHAQRREGSGPVSVHPLPLPPGVPIPSSSISMTSPSTIMPSPSTPTPSPSTPTPLPSTPITEANTKAEPISMKNQWRKGKLIGRGTFGSVYVASNRENGALCAMKEVELFHDDPKSAECIKQLEQEIKLLSQLKHPNIVQYYGSDFVEDRLYIYLEYVHPGSINKYVREHCGAMTESVVRSFTRHILSGLAYLHSTKTIHRDIKGANLLVDSCGVVKLADFGMAKHLTGQVADLSLKGSPYWMAPELLLSVKQKDNNSDLALAVDIWSLGCTIIEMFTGKPPWSDYEGAAAMFKVMRDTPTIPESLSYEARDFLKCCFQRNPAERSTAAMLLEHPFIKNLQHPDAPSCYQAIARSSLMDKCYSPSKQYSSKLDQSSMLPSSQNSKGMLAAERQELPFPLLSTSHFVIGSLSHHETSDLTVMSRHSPRSTLEALPVLSPPCLVHNVHHLSSPANAVGVVNQTNKKSHTLI 776
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7544064 7549556 - CmoCh03G010030.1 Cmo03g01003 378466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g01003 776 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 1 738 - -
Cmo03g01003 776 MobiDBLite consensus disorder prediction 72 93 - -
Cmo03g01003 776 ProSiteProfiles Protein kinase domain profile. 383 644 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo03g01003 776 MobiDBLite consensus disorder prediction 134 149 - -
Cmo03g01003 776 MobiDBLite consensus disorder prediction 57 190 - -
Cmo03g01003 776 Pfam Protein kinase domain 384 644 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo03g01003 776 Gene3D Transferase(Phosphotransferase) domain 1 379 682 - -
Cmo03g01003 776 MobiDBLite consensus disorder prediction 347 363 - -
Cmo03g01003 776 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 5 1 738 - -
Cmo03g01003 776 MobiDBLite consensus disorder prediction 268 306 - -
Cmo03g01003 776 ProSitePatterns Protein kinases ATP-binding region signature. 389 412 IPR017441 GO:0005524
Cmo03g01003 776 SMART serkin_6 383 644 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo03g01003 776 MobiDBLite consensus disorder prediction 263 369 - -
Cmo03g01003 776 MobiDBLite consensus disorder prediction 216 236 - -
Cmo03g01003 776 SUPERFAMILY Protein kinase-like (PK-like) 357 688 IPR011009 -
Cmo03g01003 776 MobiDBLite consensus disorder prediction 19 38 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g01003 Cmo-Chr3:7544064 Cmo05g00205 Cmo-Chr5:895707 6.04E-157 dispersed
Cmo03g01003 Cmo-Chr3:7544064 Cmo07g00734 Cmo-Chr7:3325183 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74201 PF00069 Pkinase 3.40E-67 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g01003 - - cmax:111478157 1274.61