Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g01021 ATGACTTTGCACCGGAACTTATTGATCGTCATAATCGCAATTTTCTCGGCTTCTTTAACAATCGCCGGGGAGTTAACGTCCTGCGAAACTGGAAATTCGGCTGAATTTGTACAACATCCGTTTGGATTCTCAAACTCGAGCCCAATCAAATTGAATTGCAGCAAAAATGGCGAGGTTCAAATCGGAAGATTCCAGGTCCAGAACATTACTGAAAGGAGCATCCTCATCAAACTTCCTGAAGAGTGCAATATCTCTATCAATTCAATGTCAGAACTGTTCGGCCAAAACTACAAGCCCACTCTCCGCAATAGTCTCCTCTTGAATTGTACTGAACAACCTATTTCATGCGGAGTAATGGCCAATTTCAGCCAGAATCAGAAGAAGAACTGCGGCTTTAAGAGTAATAATTTCACCTGCTTCACTAAGACCGAGCGGAAGGGATTTCTGCCCTCTTTAAATAAGTGCCAGTCCCTTTTGTCCTCTGTATTCGTTAATTTTACGTCACAATCGACCTCTTCGTTCGAGCTCCAGTTTGGGGTCATTGAGTTAGAGTGGTGGCTCTCGCCCGTGCCTTCTATGCGATGCTCGAAAAATGCCAATCGCAAGAACATTACCAGCTTTGCGGATCTCCTAGGATTTCGTTGCCAGTGCATAGAAGGGTTTGAAGGAAATGCTTACGACGACGTCGGCCACGGCTGCCGGAAAGTTTCTCACAAATGCAATCTTTCTACATACATTACTGGCCACTGTGGCAGAAGCAAAGTCGCTGCTCTAATTGGAGGTGTCATTGTTGGGGCCTTTATAATGGCCGTCCTGATCCTTATCTGTTACTGCATCCGACGCCGCTCATTGTGTTTGAAAGGTCAGATGAGTGCAAAGCGGCTTCTAAGTGAGGCTGCTGGAAATTCGAGTGTTACTTTATATCCCTACAAAGAAATAGAAAGAGCCACTAGTGGTTTCTCTGAGAAACAAAGGCTGGGAACTGGAGCCTTTGGTACAGTCTATGCAGGAAGGCTTCATGAGGATGAGTGGGTTGCTGTAAAAAGGATCAAATATAGAGACCACAATAGCATTGATCAGGTCATGAATGAGATAAAACTGCTTTCCTCAGTTAGCCACCCGAATCTAGTTCGCTTGCTTGGCTGTTGCATCGAGGAAGGCCAACAGATCCTTGTTTATGAGTTTATGCCTAATGGAACTCTCTCTCAACATCTTCAGAGAGAGCGTGGAAATGGCCTTCCATGGACGACACGACTCACCATTGCAGCCGAAACTTCTCGTGCAATAGCATACCTCCATTCTTCTGTGCATCCACCAATATATCACAGAGACATCAAATCAAGCAATATACTTCTGGATCATAGCTTCAAATCAAAAGTGGCAGATTTTGGTCTTTCTAGACTTGGTATGACAGAAATATCACATGTCTCAACAGCTCCGCAAGGGACCCCAGGTTATGTTGATCCGCAATACCATCAAAATTTTTATCTGTCAGATAAAAGCGATGTATATAGTTTTGGAGTAGTCCTAATAGAGATAATAACCGCATTGAAAGTGGTTGATTTCACTCGTCCCCCGAGTGAAGTAAACTTAGCCGCACTTGCCATCGATAGGATTGGGAGGGGTTGTGTGGATGAACTAATTGATCCTTTCCTCGAGCCAAATAGAGATGCTTGGACCCTCTACTCTGTTCACAAGGTGGTTGAGCTTGCATTCAGATGCCTCGCATTTCACAGCGACATGAGGCCTTCGATGACAGAAGTAGCAGAGGAACTGGAAAGCATTAGACGCAGCGGGTGGACATCAATGGAGGAGAATTTTTGTGCAGCATCATCAACAGGCTCGGCTTGCTCATCTCCTCGAAGCGTAAGCGAGAGATCCATAAGTAGCATTACAATTAAGAAGGCCGGGCTGCTTGCAGGACTGGGGAGCCAGAGATTGATAATCCCACCGGAGAACAACCATCAGAAGGACTATCTGCCTTCTGTAGAGGAGGTTATGGATAGTTCCCCAGTTTCCATACAAGATCCTTGGTTAAGTGAACAAAGCTCACCTTCAACAAATAGTTTATTGGGTAATGTGGCTCGGTGA 2091 45.1 MTLHRNLLIVIIAIFSASLTIAGELTSCETGNSAEFVQHPFGFSNSSPIKLNCSKNGEVQIGRFQVQNITERSILIKLPEECNISINSMSELFGQNYKPTLRNSLLLNCTEQPISCGVMANFSQNQKKNCGFKSNNFTCFTKTERKGFLPSLNKCQSLLSSVFVNFTSQSTSSFELQFGVIELEWWLSPVPSMRCSKNANRKNITSFADLLGFRCQCIEGFEGNAYDDVGHGCRKVSHKCNLSTYITGHCGRSKVAALIGGVIVGAFIMAVLILICYCIRRRSLCLKGQMSAKRLLSEAAGNSSVTLYPYKEIERATSGFSEKQRLGTGAFGTVYAGRLHEDEWVAVKRIKYRDHNSIDQVMNEIKLLSSVSHPNLVRLLGCCIEEGQQILVYEFMPNGTLSQHLQRERGNGLPWTTRLTIAAETSRAIAYLHSSVHPPIYHRDIKSSNILLDHSFKSKVADFGLSRLGMTEISHVSTAPQGTPGYVDPQYHQNFYLSDKSDVYSFGVVLIEIITALKVVDFTRPPSEVNLAALAIDRIGRGCVDELIDPFLEPNRDAWTLYSVHKVVELAFRCLAFHSDMRPSMTEVAEELESIRRSGWTSMEENFCAASSTGSACSSPRSVSERSISSITIKKAGLLAGLGSQRLIIPPENNHQKDYLPSVEEVMDSSPVSIQDPWLSEQSSPSTNSLLGNVAR 696
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7666036 7670622 + CmoCh03G010210.1 Cmo03g01021 378484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g01021 696 Pfam Protein tyrosine and serine/threonine kinase 323 592 IPR001245 GO:0004672|GO:0006468
Cmo03g01021 696 ProSitePatterns Serine/Threonine protein kinases active-site signature. 440 452 IPR008271 GO:0004672|GO:0006468
Cmo03g01021 696 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 14 19 634 - -
Cmo03g01021 696 ProSiteProfiles Protein kinase domain profile. 320 595 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo03g01021 696 Gene3D Transferase(Phosphotransferase) domain 1 396 613 - -
Cmo03g01021 696 ProSitePatterns Protein kinases ATP-binding region signature. 326 348 IPR017441 GO:0005524
Cmo03g01021 696 MobiDBLite consensus disorder prediction 671 696 - -
Cmo03g01021 696 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 19 634 IPR045274 GO:0007166
Cmo03g01021 696 Gene3D Phosphorylase Kinase; domain 1 282 395 - -
Cmo03g01021 696 MobiDBLite consensus disorder prediction 673 696 - -
Cmo03g01021 696 SMART serkin_6 320 601 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo03g01021 696 SUPERFAMILY Protein kinase-like (PK-like) 300 593 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g01021 Cmo-Chr3:7666036 Cmo12g00445 Cmo-Chr12:2737861 0 dispersed
Cmo08g00162 Cmo-Chr8:935090 Cmo03g01021 Cmo-Chr3:7666036 2.50E-54 transposed
Cmo03g01021 Cmo-Chr3:7666036 Cmo07g00751 Cmo-Chr7:3406838 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74202 PF07714 PK_Tyr_Ser-Thr 2.00E-44 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g01021 - - csv:101222324 1210.28