Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmo03g01032 | ATGGCGAAATCGGAGCAAAATTGGAGAAGGGGGAACGGCCCGTTGCTCCTGATTTCACAGATTCCTTCCTTCACTAATATCGCCGATTTTCTTCCTCCTTGTTTTAGGAATCTGCTTTCCACCATTTCTGATTTCGTTCCTCTGAAGCTGCTGATATTTGGGGTGGAAATTAAGATGGCGAATGAGTTTGGGGAATCAACAAGTGTGCCACATCAAAACCCTTCTTGGTCCAGTAATAGTGACAACACTAACAATGATACTGGCGATTTTGAATGCAATATCTGCTTCGAGTTAGCTCAAGACCCAATTATCACTCTTTGCGGCCATCTCTTTTGCTGGCCCTGTCTGTATAGATGGCTGCATCATCACTCGCAATGTCAAGAATGTCCTGTTTGTAAGGCTCTTGTTCAGGAGGAGAAGTTGGTTCCTCTTTATGGTAGAGGTAAAGCACCATCTGACCCAAGATTAAATAGATATCCTGGTATTGATATTCCAAATCGCCCTGCCGGGCAAAGGCCTCAAACAGCACCACCCCCTGCAGCTAATGACTTTGCAAACTACGGGTTTGGATTCACTGGTGGCTTTATGCCAATGGCGGCAGCAAGGATTGGGAACTTCACTTTAGCTACTGCTTTTGGTGGTCTGATCCCATCTTTATTCAACATCCAGTTTCATGGATTTCCTGATGCTACAGTGTATGGAACCACCTCTGGTTACCCCTATGCATTCAACACATTCCATGGGGGTCATGGTCACCATTTTCCACAGCCACCGAGTCGAGGTCAGCATGCTGATAACGTACTGAAAAATCTCTTTTTACTCGTCGGCGTCTTCGTAATTCTTGCCTTGCTTTGGTGGTGA | 861 | 45.64 | MAKSEQNWRRGNGPLLLISQIPSFTNIADFLPPCFRNLLSTISDFVPLKLLIFGVEIKMANEFGESTSVPHQNPSWSSNSDNTNNDTGDFECNICFELAQDPIITLCGHLFCWPCLYRWLHHHSQCQECPVCKALVQEEKLVPLYGRGKAPSDPRLNRYPGIDIPNRPAGQRPQTAPPPAANDFANYGFGFTGGFMPMAAARIGNFTLATAFGGLIPSLFNIQFHGFPDATVYGTTSGYPYAFNTFHGGHGHHFPQPPSRGQHADNVLKNLFLLVGVFVILALLWW | 286 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 7732278 | 7735478 | - | CmoCh03G010320.1 | Cmo03g01032 | 378495 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmo03g01032 | 286 | ProSiteProfiles | Zinc finger RING-type profile. | 92 | 133 | IPR001841 | - | |
| Cmo03g01032 | 286 | Pfam | Zinc finger, C3HC4 type (RING finger) | 91 | 132 | - | - | |
| Cmo03g01032 | 286 | MobiDBLite | consensus disorder prediction | 156 | 177 | - | - | |
| Cmo03g01032 | 286 | ProSitePatterns | Zinc finger RING-type signature. | 107 | 116 | IPR017907 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmo03g01032 | Cmo-Chr3:7732278 | Cmo05g00227 | Cmo-Chr5:968231 | 8.28E-78 | dispersed | |
| Cmo03g01032 | Cmo-Chr3:7732278 | Cmo07g00775 | Cmo-Chr7:3503464 | 1.63E-134 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmo03g01032 | K10666 | - | csv:101205026 | 446.047 |