Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g01049 ATGGGATCATCGGCGTCGGAAGAAGACTTAATAATGGCGACTCTACTGCAAGCCGAACAAGCCGCCGCTATCACCACCAATTTCGCTTCTTTCCCTGAAAACATCAATAATCTGGTTCAGCAAACCCTAAAACCCTTCCTCTTCTTCAAAGCCGACGACCAATATTCGTTACAACAACAACAACAACAACAACAACAACAACAATCGGTTTTCCCGTTCCCGTTGCCCTCAACCACCGCCACCGACACCGCCACCTCCCATCTCCTTTCCTCTCTCCTCAGATCCTCGCCTTCCTCGGTGAGGGATGCAGAAGAGAGAGGAAACGACGGAGACAACCGCAAGGGTGGATTGAGGGTGAGGACGGTGAAGATGAAGAGAATGAAAGGGAGGAGGAAAGTGAGAGAGCCTAGATTCTGCTTCAAAACCATGACGGATGTGGACGTTCTTGACGACGGTTACAAATGGAGAAAGTACGGCCAAAAAGTTGTTAAGAACACCCTCCATCCAAGGAGTTACTATCGTTGCACGGAAGAGAATTGTAAGGTAAAGAAACGAGTAGAAAGATTAGCAGAAGATCCGAGAATGGTAATAACGACCTACGAAGGAAGACACGCTCATTCACCGTCCGATCCTAATTTAGAACACACCAACATGGGTTGCCTCAACACTTTGTTTTGTTAG 681 47.58 MGSSASEEDLIMATLLQAEQAAAITTNFASFPENINNLVQQTLKPFLFFKADDQYSLQQQQQQQQQQQSVFPFPLPSTTATDTATSHLLSSLLRSSPSSVRDAEERGNDGDNRKGGLRVRTVKMKRMKGRRKVREPRFCFKTMTDVDVLDDGYKWRKYGQKVVKNTLHPRSYYRCTEENCKVKKRVERLAEDPRMVITTYEGRHAHSPSDPNLEHTNMGCLNTLFC 226
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7826027 7826987 + CmoCh03G010490.1 Cmo03g01049 378512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g01049 226 MobiDBLite consensus disorder prediction 91 116 - -
Cmo03g01049 226 ProSiteProfiles WRKY domain profile. 144 209 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo03g01049 226 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 48 211 IPR044810 GO:0003700
Cmo03g01049 226 Gene3D WRKY domain 136 202 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cmo03g01049 226 MobiDBLite consensus disorder prediction 99 116 - -
Cmo03g01049 226 Pfam WRKY DNA -binding domain 150 206 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo03g01049 226 PANTHER WRKY TRANSCRIPTION FACTOR 13-RELATED 48 211 - -
Cmo03g01049 226 SMART WRKY_cls 149 208 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo03g01049 226 SUPERFAMILY WRKY DNA-binding domain 141 208 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo03g01049 Cmo20g01135 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g01049 Cmo-Chr3:7826027 Cmo06g00963 Cmo-Chr6:7545161 4.30E-42 dispersed
Cmo14g02238 Cmo-Chr14:15875010 Cmo03g01049 Cmo-Chr3:7826027 1.97E-49 transposed
Cmo02g00599 Cmo-Chr2:3670966 Cmo03g01049 Cmo-Chr3:7826027 3.28E-58 wgd
Cmo20g01135 Cmo-Chr20:11017198 Cmo03g01049 Cmo-Chr3:7826027 7.62E-56 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9448 PF03106 WRKY 4.40E-25 CL0274 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g01049 - - cpep:111804309 345.125