Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g01063 ATGGATACCGCTGGGAGACTCATTGCTGGGTCTCATAATCGAAACGAGTTTGTTCTGATCAATGCAGACGAGACTGCTCGGATCAAGGCTGTGAAGGAATTGAGTGGACAAACATGTCAGATTTGTGGAGATGAGGTTGAGTTAACTGTTGAGGGAGAGCTCTTTGTTGCCTGTAATGAATGTGCTTTCCCAGTTTGTAGACCTTGTTATGAGTATGAGAGAAGAGAGGGAAACCAAGCTTGTCCACAGTGTAAAACCAGATACAAACGCATTAAAGGTAGTCCGAGGGTTGAGGGTGATGAGGATGAAGATGGTATCGATGATTTGGACAACGAGTTTGACTATGCAAACCTCGATTCTTTGGGCCCTTATCATTCTGGAGAGGGAACGTATGGCTCGTACCATAACACGGGCCGTGGACAGTCGGAGCTTGAACCTACTCCCCTTGGTTCTGAGATTCCTCTCCTGACATATGGCGAGGTGGATTATGAGATTTCTTCTGATCAACATGCTCTTGTGCCCCATTTTATGGGTCATGGGAATCGAGTCCATCCAATGCCTTTCCATGATCCATCAATTCCTTCTCAACCTAGACCTATGGTTCCCCAAAAAGATATTGCGGTGTACGGTTATGGGAGCGTGGCATGGAAGGACCGAATGGAAGATTGGAAGAAGAAGCAAAATGATAAACTTCAAGTGGTGAAACACCAAGGAGTCGATGATGGTGGAAACGATATCGATGATCCCGATTTGCCCATGATGGACGAAGCTAGGCAACCACTATCAAGGAAATTACCCATCTCTTCGAGCAGGATAAATCCATACAGATTAATCATCTTGCTTCGTCTTGTTATTCTTGGCCTGTTTTTCCAGTACAGAATTCTTCATCCAGTTAAAGATGCGTATGGCCTATGGTTAACTTCGGTAATATGTGAAATATGGTTCGCCGTTTCGTGGATTCTGGATCAGTTCCCAAAATGGTGTCCAATAGAACGGGAAACTTATCTCGATAGGCTGTCACTGAGGTATGAGAAAGAAGGGAAGCCTTCTGAATTAGCCAGTGTGGACGTATTTGTTAGTACTGTCGATCCGACCAAAGAACCTCCATTGATCACTGCAAATACAGTACTTTCCATCCTTGCAGTTGACTACCCAGTCGATAAAGTTGCATGCTATGTCTCGGATGATGGTGCAGCCATGTTAACATTCGAAGCACTCTCGGAGACATCTGAATTTGCAAGGAAATGGGTCCCTTTCTGTAAGAAATTCAATATCGAGCCCCGTGCCCCCGAGTTTTATTTCTCTCAGAAGATCGATTATTTGAAGAACAAGGTCCACCCAGCATTTGTCAGGGAAAGGCGAGCGATGAAGAGAGAGTACGAAGAGTTTAAGGTTAGGATAAATGCTTTGGTCTCCATGTCTCTAAAGGTTCCCGAGGATGGCTGGACAATGCAAGACGGTACTCCATGGCCTGGGAACAATGTTCGAGACCACCCCGGCATGATTCAGGTTTTCCTTGGCCAGAACGGAGTATGCGACATTGAAGGAAACGAGCTACCACGTTTGGTTTATGTTTCTCGTGAAAAGCGGCCAGGGTTCGAACATCACAAAAAGGCCGGTGCCATGAATTCACTGATTCGGGTCTCAGCTGTTCTGTCAAACGCTCCCTATCTTCTTAATGTTGACTGTGATCACTACATTAACAATAGCAAGGCACTTAGAGAAGCTATGTGTTTCATGATGGATCCGACATCCGGGAAGAAAGTTTGTTATGTGCAGTTTCCTCAAAGATTCGATGGGATTGATCGACACGATAGATATTCAAACCGGAACGTTGTATTCTTTGATATTAACATGAAAGGATTAGACGGAATACAAGGACCGATATACGTTGGTACGGGATGTGTTTTCCGGAGGGTTGCTCTCTACGGATTTGACGCTCCTGCCGAGAAAAAACCGCCAAGCAAAACATGCAACTGTTTGCCAAAATGGTGCTGTTTATGTTGTGGGTCTAGAAGGAACAAGAAAGGAAAGGCTAAGAATGAGAAAAAGAAGAAGACCAAGCACAGAGAAGCATCAAAGCAGATCCATGCTCTCGAGAATATCGAGGAGGGAATCGAAGAACTAAGCATAGAGAAACTGAGCGTGTCTGAAATAAAACTGGCGAAGAAATATGGGCAATCTCCAGTGTTCGTCGCCTCGACCCTGTTGGAAAATGGAGGCGTTCCTCATGATGTGAGTGCTGCATCTCTTCTAAGAGAAGCCATTCAAGTCATCAGTTGTGGTTATGAAGATAAAACAGAATGGGGGAAAGAGGTTGGCTGGATTTATGGTTCTGTGACTGAAGATATCTTAACTGGATTCAAAATGCACTGTCATGGCTGGCGGTCGGTGTATTGTATTCCGAAGAGACCCGCGTTTAAGGGGTCAGCTCCGATCAATCTCTCGGATCGTCTTCACCAAGTTCTTCGGTGGGCTTTAGGATCTGTCGAGATATTCTTGAGCAGACACTGTCCTATCTGGTATGGTTATGGAGGCGGGTTGAAATGGTTGGAACGATTCTCGTACATAAACTCGGTGGTCTATCCGTGGACCTCGATTCCGTTGCTCGTTTACTGTAGTCTTCCAGCTATCTGTCTTCTCACTGGAAAATTTATTGTTCCTGAGATTAGCAACTATGCTAGTCTTATTTTCATGGCACTCTTCATTTCAATTGCTGCGACGGGTATCCTCGAGATGCAGTGGGGCGGTGTCGGGATCGACGACTGGTGGAGGAACGAGCAGTTCTGGGTTATCGGAGGCGTTTCGTCGCATCTTTTTGCTCTCTTCCAAGGTCTACTCAAGGTTTTAGCCGGTGTGAGTACCAACTTCACAGTTACATCCAAAGCAGCCGATGATGGTGAATTTTCAGAGCTCTATATTTTCAAGTGGACATCACTGTTAATACCTCCCACAACCTTGTTGATCATAAACATCGTCGGTGTGATCGTCGGGATCTCAGATGCCATCAATAATGGATACGATTCCTGGGGTCCTCTTTTCGGGAGGCTATTTTTCGCTCTTTGGGTGATTATCCACCTCTACCCGTTCCTGAAGGGATTGTTAGGGAAACAGGATCGGATACCGACGATCATCGTTGTTTGGTCCATTCTTTTAGCCTCAATCTTAACATTACTTTGGGTAAGGATCAACCCATTTGTATCCAGAGATGGTCCTGTTTTAGAAGTTTGCGGGTTGAACTGTGATTAG 3249 45.31 MDTAGRLIAGSHNRNEFVLINADETARIKAVKELSGQTCQICGDEVELTVEGELFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRIKGSPRVEGDEDEDGIDDLDNEFDYANLDSLGPYHSGEGTYGSYHNTGRGQSELEPTPLGSEIPLLTYGEVDYEISSDQHALVPHFMGHGNRVHPMPFHDPSIPSQPRPMVPQKDIAVYGYGSVAWKDRMEDWKKKQNDKLQVVKHQGVDDGGNDIDDPDLPMMDEARQPLSRKLPISSSRINPYRLIILLRLVILGLFFQYRILHPVKDAYGLWLTSVICEIWFAVSWILDQFPKWCPIERETYLDRLSLRYEKEGKPSELASVDVFVSTVDPTKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFNIEPRAPEFYFSQKIDYLKNKVHPAFVRERRAMKREYEEFKVRINALVSMSLKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQNGVCDIEGNELPRLVYVSREKRPGFEHHKKAGAMNSLIRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKVCYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRVALYGFDAPAEKKPPSKTCNCLPKWCCLCCGSRRNKKGKAKNEKKKKTKHREASKQIHALENIEEGIEELSIEKLSVSEIKLAKKYGQSPVFVASTLLENGGVPHDVSAASLLREAIQVISCGYEDKTEWGKEVGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPIWYGYGGGLKWLERFSYINSVVYPWTSIPLLVYCSLPAICLLTGKFIVPEISNYASLIFMALFISIAATGILEMQWGGVGIDDWWRNEQFWVIGGVSSHLFALFQGLLKVLAGVSTNFTVTSKAADDGEFSELYIFKWTSLLIPPTTLLIINIVGVIVGISDAINNGYDSWGPLFGRLFFALWVIIHLYPFLKGLLGKQDRIPTIIVVWSILLASILTLLWVRINPFVSRDGPVLEVCGLNCD 1082
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7914116 7920532 - CmoCh03G010630.1 Cmo03g01063 378526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g01063 1082 SUPERFAMILY RING/U-box 26 111 - -
Cmo03g01063 1082 Pfam Zinc-binding RING-finger 29 105 IPR027934 -
Cmo03g01063 1082 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 1 1081 - -
Cmo03g01063 1082 CDD mRING-HC-C4C4_CesA_plant 37 87 - -
Cmo03g01063 1082 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 21 112 IPR013083 -
Cmo03g01063 1082 Pfam Cellulose synthase 355 1070 IPR005150 GO:0016020|GO:0016760|GO:0030244
Cmo03g01063 1082 ProSiteProfiles Zinc finger RING-type profile. 39 85 IPR001841 -
Cmo03g01063 1082 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 510 648 IPR029044 -
Cmo03g01063 1082 SUPERFAMILY Nucleotide-diphospho-sugar transferases 364 900 IPR029044 -
Cmo03g01063 1082 PANTHER CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 9 [UDP-FORMING]-RELATED 1 1081 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo03g01063 Cmo07g00802 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00943 Cmo-Chr1:5607120 Cmo03g01063 Cmo-Chr3:7914116 0 dispersed
Cmo03g01063 Cmo-Chr3:7914116 Cmo09g01185 Cmo-Chr9:8679508 0 dispersed
Cmo17g01333 Cmo-Chr17:10447348 Cmo03g01063 Cmo-Chr3:7914116 0 dispersed
Cmo03g01063 Cmo-Chr3:7914116 Cmo07g00802 Cmo-Chr7:3683908 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g01063 K10999 - csv:101211094 2059.26