Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g01065 ATGGTTCGGTTGGATTTAGATGATTTCCGGACCATATTGGATACAGCCGGTGTCGATGTTTGGACCTTCATCGATACAGCTATGGAGGTTGCTTCAATGGATTACGGCAATCAATTGAAAAATCGGAGAGACGGAATCGTTGAGAGGCTCTATGCGTTGACTTCGCCTCCTACTCGATGTCGGAATTGCGATACGGATCGCTATAACGACGGCCGTTCTAATGGCTGTGAAATCAAACAGAGCCCCGTTGAGGCTAAGGAAGCTTCCCCTTCGACGCCGCAGTTCGTTGTAGTCGAAGGAGACGACGAGGGAGTAGACCCGTATGGAGGTTTGTTTGATGATGAACAGAAGAAGGTTTTAGAAATAAAGGAGCAGCTTGAAATTCCTCACCAGCCTGAAGATGCCTTGGTTGAACTGCTTCAAAACTTGGCAGACATGGATATAACATTCCAAGCTCTTAAGGAAACTGATATTGGAAGGCATGTGAACCGGTTGAGGAAGCATTCATCAAATGATGTTCGCAGATTGGTGAAACATCTTGTCAGAAAATGGAAGGAGATTGTGGATGAATGGGTCAGGTTGAATCAGCCTGGGGAGCAGACAGCTACACTCATAGCTGATGGTGACTCACCCCAGCAAAAGGTTACTCAAAATGGTTATCACCAGGTTCCTGATTTTGCGTACTCTCCGAATCCACACAATGGAGGTTCTGGGTCAGATAGAAATAACGTAGAACCCGAACCGAAGGGAAAGTCCGTTCCAAGAAGAGATGCCCCGCCAAAACCAGCACAACCGGCTCCAATGTCGTCATATACTCCTCAAAATAGACAGAAAGAACAACAGAAGGAAGCAAATTTTGATTCCCAAAAGCTTGCATCAGCTAGAAAAAGGCTTCAAGAAAATTACAAAGAAGCTGAAAATGCTAAAAAGCAAAGAACAATCCAAGTAATGGACATTCATGAGATCCCAAAGCCAAAAAATACCTTCTTCTCAAAGAACAAAGGCACCGGCGGTGGCTCTCAAGGCAGACATTGGTGA 1038 45.28 MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASMDYGNQLKNRRDGIVERLYALTSPPTRCRNCDTDRYNDGRSNGCEIKQSPVEAKEASPSTPQFVVVEGDDEGVDPYGGLFDDEQKKVLEIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHLVRKWKEIVDEWVRLNQPGEQTATLIADGDSPQQKVTQNGYHQVPDFAYSPNPHNGGSGSDRNNVEPEPKGKSVPRRDAPPKPAQPAPMSSYTPQNRQKEQQKEANFDSQKLASARKRLQENYKEAENAKKQRTIQVMDIHEIPKPKNTFFSKNKGTGGGSQGRHW 345
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7936736 7939997 + CmoCh03G010650.1 Cmo03g01065 378528

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g01065 345 ProSiteProfiles TFIIS N-terminal domain profile. 114 191 IPR017923 -
Cmo03g01065 345 Coils Coil 288 315 - -
Cmo03g01065 345 MobiDBLite consensus disorder prediction 280 319 - -
Cmo03g01065 345 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 113 202 IPR035441 -
Cmo03g01065 345 SMART TFS2_5 119 190 IPR003617 GO:0005634
Cmo03g01065 345 CDD TFIIS_I 116 189 - -
Cmo03g01065 345 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED 4 345 - -
Cmo03g01065 345 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 117 198 IPR035441 -
Cmo03g01065 345 MobiDBLite consensus disorder prediction 222 345 - -
Cmo03g01065 345 Pfam TFIIS helical bundle-like domain 139 188 IPR017923 -
Cmo03g01065 345 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED 4 345 IPR044790 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g01065 - - - csv:101211592 652.514
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo03g01065 Cmo07g00803 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g01065 Cmo-Chr3:7936736 Cmo06g00031 Cmo-Chr6:204842 1.23E-09 dispersed
Cmo03g01065 Cmo-Chr3:7936736 Cmo07g00803 Cmo-Chr7:3696220 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1212 . . Bda04g00345 . . . Bma09g00240 . . . Cma03g01070 Cma07g00779 Car03g00964 Car07g00767 Sed14g0207 Cpe19g00546 Cpe10g00356 Bhi03g01399 Tan03g1346 Cmetu04g0645 . Hepe04g1136 . . Cla01g01539 Cam01g1610 Cec04g1256 Cco04g1328 Clacu01g1636 Cmu01g1523 Cre04g1201 . . . . Lsi01g01123 . . . . . . . . Bpe06g00282 . . . Cmo03g01065 Cmo07g00803 . . . . . . . . . . . . . . . . . . . . . Csa06g02814 Chy02g01021 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003587 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 0 2 1 4 3 2 45
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9450 PF08711 Med26 7.20E-13 No_clan Cmo TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo03g01065 Cmo_Chr03 FPKM 4.70535 4.552847 6.971926 6.06649 10.803345 12.631363 12.412671 6.838418 9.009999 8.375495