Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g01066 ATGGCTTCCAACAACCCTTACATCGTTGCATTCTTCATCCAAATCACCTACGCCGGTATGAGCCTCATGTCCAAGGCCGCCTTTGCCTCCGGTATGAACACGTATATCTTCCTCTTCTATCGTCAAGCTGCTGGTACTCTTGTTTTGGTCCCGCTTACTCTACTCTTAAAAGGGAAGGAGAAGAGGCCGTTGTCTTTGAAGCATTTGTGCCAGATTTTTGTCATTTCATTGATAGGGATCACTCTAGCATTGGATGCATATGGAGTAGCGATTAACTATACGTCGGCAACATTGGGCGCCGCAGCTTTCAACTGCGTTCCTGTCACCACATTCTTCTTCGCACTCATACTAAGAATGGAGAAGGTGAAGCTAAATAAAGCAGCCGGGATAGCAAAGGTGGTGGGCATAATGATATGCATGGCGGGCGCCGCCATTCTAGCCTTCTACAAAGGCCCATATTTGAGCCCAATTTTGAGCCACCACCAACTATTCCACCACGTCCAAACCCAAACCCAAACCCACCACCCTCCCACCTCCCAAAACACATGGATGATCGGCTGCTTCTTCCTCCTCGTCACCAGCGTCTCTTGGGGGATCTGGTTCGTTCTCCAGGCTCGATTCTTGAAGGAGTACCCGCACCCGATGGAGTTCATGTGCGCGCAGACCGTCATGAGCACGGCTCAGACCTTCTTCGTAGCCATCGCCATGGAAAGAGACCCTTTGGAGTGGAAATTGGGCTGGAATGTCCGACTCTACGCTGTGCTCTATTGTGGAGTGCTAGTCATTGGCGTGGCAAATAATGCCCAATGTTGGGTCATCAGAGAGAAGGGTCCAGTTTTTCAAGCCATGACGACGCCGTTGAACTTAATGGCTACAATAATTGGTTCCCTATTGCTACTTTCCGAAGGAATTTACGTGGGAAGTATAATAGGAGCATCGTTGCTGGTAATGAGTCTTTACAGTGTTTTGTGGGGTAAAAGCAAGGAGCTTGTCACTGCTCCAAACGACCAACAACCGTCTCCACCAATAAAACAGGTTGAAGAGTCGACATGTCGTTCTGAAGTCAACTCCACGTTAGTCTAA 1083 48.85 MASNNPYIVAFFIQITYAGMSLMSKAAFASGMNTYIFLFYRQAAGTLVLVPLTLLLKGKEKRPLSLKHLCQIFVISLIGITLALDAYGVAINYTSATLGAAAFNCVPVTTFFFALILRMEKVKLNKAAGIAKVVGIMICMAGAAILAFYKGPYLSPILSHHQLFHHVQTQTQTHHPPTSQNTWMIGCFFLLVTSVSWGIWFVLQARFLKEYPHPMEFMCAQTVMSTAQTFFVAIAMERDPLEWKLGWNVRLYAVLYCGVLVIGVANNAQCWVIREKGPVFQAMTTPLNLMATIIGSLLLLSEGIYVGSIIGASLLVMSLYSVLWGKSKELVTAPNDQQPSPPIKQVEESTCRSEVNSTLV 360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7944503 7946483 + CmoCh03G010660.1 Cmo03g01066 378529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g01066 360 SUPERFAMILY Multidrug resistance efflux transporter EmrE 40 149 - -
Cmo03g01066 360 Pfam EamA-like transporter family 184 323 IPR000620 GO:0016020|GO:0016021
Cmo03g01066 360 Pfam EamA-like transporter family 6 134 IPR000620 GO:0016020|GO:0016021
Cmo03g01066 360 PANTHER WAT1-RELATED PROTEIN 5 338 - -
Cmo03g01066 360 PANTHER WAT1-RELATED PROTEIN 5 338 IPR030184 GO:0016021|GO:0022857
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo03g01066 Cmo20g01088 CCT
Cmo02g00591 Cmo03g01066 CCT
Cmo03g01066 Cmo07g00804 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g01066 Cmo-Chr3:7944503 Cmo07g00805 Cmo-Chr7:3711177 8.83E-163 dispersed
Cmo02g00591 Cmo-Chr2:3540127 Cmo03g01066 Cmo-Chr3:7944503 1.81E-106 wgd
Cmo03g01066 Cmo-Chr3:7944503 Cmo07g00804 Cmo-Chr7:3703448 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g01066 - - csv:101205842 557.755