Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g01068 ATGCAACTGAGATCTAGGATTTGGCGATGTGTAGCTTTTGATTTCCGCATGCAATTCTGTAATCGCGCATTGCTGCGCAGCTTTCTGTTTTTGAAAGAGATGGCAGACGCTGAAGATATTCAGCCACTTGTTTGTGACAATGGAACTGGAATGGTGAAGGCTGGCTTTGCTGGTGATGATGCTCCTAGGGCTGTTTTTCCCAGTATTGTTGGTCGTCCCCGACATACCGGTGTCATGGTTGGAATGGGCCAAAAAGATGCCTATGTTGGGGATGAGGCTCAGTCCAAAAGAGGTATCCTTACCTTGAAATATCCCATTGAGCATGGTATAGTCAGTAACTGGGATGACATGGAAAAGATTTGGCATCACACATTTTACAATGAACTTCGTGTTGCTCCCGAAGAGCACCCTGTGCTTCTGACTGAGGCTCCACTCAACCCAAAGGCTAACAGAGAAAAGATGACTCAAATCATGTTTGAGACGTTTAATGTGCCTGCTATGTACGTTGCCATCCAGGCCGTTCTGTCCCTATATGCTAGTGGACGTACAACTGGTATTGTGCTGGATTCTGGTGATGGTGTGAGTCACACCGTTCCCATTTACGAGGGTTATGCCCTCCCTCATGCAATTCTTCGTTTAGACCTTGCCGGTCGTGACCTCACTGATGCTTTGATGAAGATTCTCACCGAAAGAGGTTACATGTTCACCACTACTGCTGAACGGGAAATTGTCCGTGACATGAAGGAGAAGCTGGCATATGTTGCTCTTGACTATGAACAAGAACTCGAGACTGCAAAGAGCAGTTCCTCTATTGAGAAGAACTACGAACTTCCTGATGGACAAGTCATCACCATTGGAGCTGAAAGATTCCGTTGCCCAGAAGTTCTATTCCAACCATCTCTCATTGGTATGGAAGCTGCAGGAATCCACGAAACTACCTACAACTCCATCATGAAGTGTGACGTAGATATCAGAAAGGACCTTTACGGAAACATCGTCCTCAGTGGTGGCTCAACCATGTTCCCTGGCATTGCAGACAGGATGAGCAAGGAAATTACAGCCCTCGCTCCCAGCAGCATGAAGATTAAGGTTGTTGCCCCACCCGAAAGGAAATACAGTGTCTGGATTGGAGGGTCTATTCTCGCATCCCTAAGTACCTTCCAGCAGCTCACAATTGCTGGTGACCCTCCAGATTTGTGGCAAAAAGAATCTGTTCTGTTCTGTCATCTGTGA 1233 46.8 MQLRSRIWRCVAFDFRMQFCNRALLRSFLFLKEMADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSIEKNYELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQLTIAGDPPDLWQKESVLFCHL 410
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7950941 7957871 - CmoCh03G010680.1 Cmo03g01068 378531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g01068 410 ProSitePatterns Actins and actin-related proteins signature. 139 151 IPR020902 -
Cmo03g01068 410 PANTHER ACTIN 34 398 IPR004000 -
Cmo03g01068 410 Gene3D Actin; Chain A, domain 4 215 306 - -
Cmo03g01068 410 PRINTS Actin signature 84 95 IPR004000 -
Cmo03g01068 410 PRINTS Actin signature 150 163 IPR004000 -
Cmo03g01068 410 PRINTS Actin signature 271 287 IPR004000 -
Cmo03g01068 410 PRINTS Actin signature 61 70 IPR004000 -
Cmo03g01068 410 PRINTS Actin signature 96 118 IPR004000 -
Cmo03g01068 410 PRINTS Actin signature 175 194 IPR004000 -
Cmo03g01068 410 CDD NBD_sugar-kinase_HSP70_actin 43 216 - -
Cmo03g01068 410 ProSitePatterns Actins signature 1. 88 98 IPR004001 -
Cmo03g01068 410 PANTHER ACTIN 34 398 - -
Cmo03g01068 410 SUPERFAMILY Actin-like ATPase domain 39 188 IPR043129 -
Cmo03g01068 410 Gene3D - 173 373 - -
Cmo03g01068 410 SUPERFAMILY Actin-like ATPase domain 182 392 IPR043129 -
Cmo03g01068 410 Gene3D - 43 392 - -
Cmo03g01068 410 SMART actin_3 40 407 IPR004000 -
Cmo03g01068 410 Pfam Actin 38 393 IPR004000 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g01068 Cmo-Chr3:7950941 Cmo02g00620 Cmo-Chr2:3851300 0 dispersed
Cmo03g01068 Cmo-Chr3:7950941 Cmo07g00807 Cmo-Chr7:3719562 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g01068 K10355 - csv:101220617 713.761