Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g01068 ATGCAACTGAGATCTAGGATTTGGCGATGTGTAGCTTTTGATTTCCGCATGCAATTCTGTAATCGCGCATTGCTGCGCAGCTTTCTGTTTTTGAAAGAGATGGCAGACGCTGAAGATATTCAGCCACTTGTTTGTGACAATGGAACTGGAATGGTGAAGGCTGGCTTTGCTGGTGATGATGCTCCTAGGGCTGTTTTTCCCAGTATTGTTGGTCGTCCCCGACATACCGGTGTCATGGTTGGAATGGGCCAAAAAGATGCCTATGTTGGGGATGAGGCTCAGTCCAAAAGAGGTATCCTTACCTTGAAATATCCCATTGAGCATGGTATAGTCAGTAACTGGGATGACATGGAAAAGATTTGGCATCACACATTTTACAATGAACTTCGTGTTGCTCCCGAAGAGCACCCTGTGCTTCTGACTGAGGCTCCACTCAACCCAAAGGCTAACAGAGAAAAGATGACTCAAATCATGTTTGAGACGTTTAATGTGCCTGCTATGTACGTTGCCATCCAGGCCGTTCTGTCCCTATATGCTAGTGGACGTACAACTGGTATTGTGCTGGATTCTGGTGATGGTGTGAGTCACACCGTTCCCATTTACGAGGGTTATGCCCTCCCTCATGCAATTCTTCGTTTAGACCTTGCCGGTCGTGACCTCACTGATGCTTTGATGAAGATTCTCACCGAAAGAGGTTACATGTTCACCACTACTGCTGAACGGGAAATTGTCCGTGACATGAAGGAGAAGCTGGCATATGTTGCTCTTGACTATGAACAAGAACTCGAGACTGCAAAGAGCAGTTCCTCTATTGAGAAGAACTACGAACTTCCTGATGGACAAGTCATCACCATTGGAGCTGAAAGATTCCGTTGCCCAGAAGTTCTATTCCAACCATCTCTCATTGGTATGGAAGCTGCAGGAATCCACGAAACTACCTACAACTCCATCATGAAGTGTGACGTAGATATCAGAAAGGACCTTTACGGAAACATCGTCCTCAGTGGTGGCTCAACCATGTTCCCTGGCATTGCAGACAGGATGAGCAAGGAAATTACAGCCCTCGCTCCCAGCAGCATGAAGATTAAGGTTGTTGCCCCACCCGAAAGGAAATACAGTGTCTGGATTGGAGGGTCTATTCTCGCATCCCTAAGTACCTTCCAGCAGCTCACAATTGCTGGTGACCCTCCAGATTTGTGGCAAAAAGAATCTGTTCTGTTCTGTCATCTGTGA 1233 46.8 MQLRSRIWRCVAFDFRMQFCNRALLRSFLFLKEMADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSIEKNYELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQLTIAGDPPDLWQKESVLFCHL 410
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7950941 7957871 - CmoCh03G010680.1 Cmo03g01068 378531

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g01068 410 ProSitePatterns Actins and actin-related proteins signature. 139 151 IPR020902 -
Cmo03g01068 410 PANTHER ACTIN 34 398 IPR004000 -
Cmo03g01068 410 Gene3D Actin; Chain A, domain 4 215 306 - -
Cmo03g01068 410 PRINTS Actin signature 84 95 IPR004000 -
Cmo03g01068 410 PRINTS Actin signature 150 163 IPR004000 -
Cmo03g01068 410 PRINTS Actin signature 271 287 IPR004000 -
Cmo03g01068 410 PRINTS Actin signature 61 70 IPR004000 -
Cmo03g01068 410 PRINTS Actin signature 96 118 IPR004000 -
Cmo03g01068 410 PRINTS Actin signature 175 194 IPR004000 -
Cmo03g01068 410 CDD NBD_sugar-kinase_HSP70_actin 43 216 - -
Cmo03g01068 410 ProSitePatterns Actins signature 1. 88 98 IPR004001 -
Cmo03g01068 410 PANTHER ACTIN 34 398 - -
Cmo03g01068 410 SUPERFAMILY Actin-like ATPase domain 39 188 IPR043129 -
Cmo03g01068 410 Gene3D - 173 373 - -
Cmo03g01068 410 SUPERFAMILY Actin-like ATPase domain 182 392 IPR043129 -
Cmo03g01068 410 Gene3D - 43 392 - -
Cmo03g01068 410 SMART actin_3 40 407 IPR004000 -
Cmo03g01068 410 Pfam Actin 38 393 IPR004000 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g01068 K10355 ACTF; actin, other eukaryote - csv:101220617 713.761
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g01068 Cmo-Chr3:7950941 Cmo02g00620 Cmo-Chr2:3851300 0 dispersed
Cmo03g01068 Cmo-Chr3:7950941 Cmo07g00807 Cmo-Chr7:3719562 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo02g00807 CST 35 411 Cytoskeleton Gene Families AT2G37620 96.3 8.0e-215 743.4
Cmo07g01037 . 1 377 Cytoskeleton Gene Families AT2G37620 96.3 8.9e-214 740.0
Cmo14g00419 CST 1 377 Cytoskeleton Gene Families AT2G37620 96.3 1.5e-213 739.2
Cmo07g00807 CCT 1 377 Cytoskeleton Gene Families AT2G37620 95.5 3.4e-213 738.0
Cmo02g00620 CCT,CST 1 377 Cytoskeleton Gene Families AT2G37620 95.5 3.4e-213 738.0
Cmo06g00095 CST 1 377 Cytoskeleton Gene Families AT2G37620 96.0 4.4e-213 737.6
Cmo15g00397 CCT 1 377 Cytoskeleton Gene Families AT2G37620 95.8 2.9e-212 734.9
Cmo20g00447 CST 1 377 Cytoskeleton Gene Families AT2G37620 95.2 2.9e-212 734.9
Cmo19g00310 . 1 377 Cytoskeleton Gene Families AT2G37620 94.7 2.9e-212 734.9
Cmo04g01263 CCT,CST 1 377 Cytoskeleton Gene Families AT2G37620 95.5 4.9e-212 734.2
Cmo04g00222 CCT,CST 1 377 Cytoskeleton Gene Families AT2G37620 95.5 4.9e-212 734.2
Cmo11g01508 . 1 377 Cytoskeleton Gene Families AT2G37620 94.4 4.9e-212 734.2
Cmo20g01080 CCT,CST 1 396 Cytoskeleton Gene Families AT2G37620 90.9 1.0e-209 726.5
Cmo03g01068 . 34 393 Cytoskeleton Gene Families AT2G37620 95.3 8.6e-201 696.8
Cmo04g02766 . 270 626 Cytoskeleton Gene Families AT2G37620 95.8 2.5e-200 695.3
Cmo03g00438 . 1 357 Cytoskeleton Gene Families AT2G37620 95.5 4.7e-199 691.0
Cmo15g00397 CCT 1 377 Cytoskeleton Gene Families AT5G59370 96.8 8.9e-214 740.0
Cmo04g01263 CCT,CST 1 377 Cytoskeleton Gene Families AT5G59370 96.6 1.5e-213 739.2
Cmo06g00095 CST 1 377 Cytoskeleton Gene Families AT5G59370 96.6 4.4e-213 737.6
Cmo14g00419 CST 1 377 Cytoskeleton Gene Families AT5G59370 96.3 1.7e-212 735.7
Cmo04g00222 CCT,CST 1 377 Cytoskeleton Gene Families AT5G59370 95.8 2.2e-212 735.3
Cmo02g00807 CST 35 411 Cytoskeleton Gene Families AT5G59370 95.8 3.7e-212 734.6
Cmo20g00447 CST 1 377 Cytoskeleton Gene Families AT5G59370 95.8 8.3e-212 733.4
Cmo07g01037 . 1 377 Cytoskeleton Gene Families AT5G59370 95.8 4.1e-211 731.1
Cmo19g00310 . 1 377 Cytoskeleton Gene Families AT5G59370 93.9 1.2e-210 729.6
Cmo11g01508 . 1 377 Cytoskeleton Gene Families AT5G59370 94.2 1.2e-210 729.6
Cmo07g00807 CCT 1 377 Cytoskeleton Gene Families AT5G59370 94.4 4.6e-210 727.6
Cmo02g00620 CCT,CST 1 377 Cytoskeleton Gene Families AT5G59370 94.4 4.6e-210 727.6
Cmo20g01080 CCT,CST 1 396 Cytoskeleton Gene Families AT5G59370 89.9 1.4e-206 716.1
Cmo04g02766 . 270 626 Cytoskeleton Gene Families AT5G59370 96.9 7.8e-202 700.3
Cmo03g01068 . 34 393 Cytoskeleton Gene Families AT5G59370 94.2 1.2e-197 686.4
Cmo03g00438 . 1 357 Cytoskeleton Gene Families AT5G59370 95.2 1.2e-197 686.4
Cmo15g00397 CCT 1 377 Cytoskeleton Gene Families AT3G46520 97.1 4.0e-214 741.1
Cmo04g01263 CCT,CST 1 377 Cytoskeleton Gene Families AT3G46520 96.8 6.8e-214 740.3
Cmo06g00095 CST 1 377 Cytoskeleton Gene Families AT3G46520 96.8 2.0e-213 738.8
Cmo14g00419 CST 1 377 Cytoskeleton Gene Families AT3G46520 96.6 7.5e-213 736.9
Cmo04g00222 CCT,CST 1 377 Cytoskeleton Gene Families AT3G46520 96.0 9.8e-213 736.5
Cmo02g00807 CST 35 411 Cytoskeleton Gene Families AT3G46520 96.0 1.7e-212 735.7
Cmo20g00447 CST 1 377 Cytoskeleton Gene Families AT3G46520 96.0 3.7e-212 734.6
Cmo07g01037 . 1 377 Cytoskeleton Gene Families AT3G46520 96.0 1.9e-211 732.3
Cmo19g00310 . 1 377 Cytoskeleton Gene Families AT3G46520 94.2 5.4e-211 730.7
Cmo11g01508 . 1 377 Cytoskeleton Gene Families AT3G46520 94.4 5.4e-211 730.7
Cmo07g00807 CCT 1 377 Cytoskeleton Gene Families AT3G46520 94.7 2.0e-210 728.8
Cmo02g00620 CCT,CST 1 377 Cytoskeleton Gene Families AT3G46520 94.7 2.0e-210 728.8
Cmo20g01080 CCT,CST 1 396 Cytoskeleton Gene Families AT3G46520 90.2 6.2e-207 717.2
Cmo04g02766 . 270 626 Cytoskeleton Gene Families AT3G46520 97.2 3.5e-202 701.4
Cmo03g01068 . 34 393 Cytoskeleton Gene Families AT3G46520 94.4 5.2e-198 687.6
Cmo03g00438 . 1 357 Cytoskeleton Gene Families AT3G46520 95.0 3.4e-197 684.9
Cmo02g00807 CST 35 411 Cytoskeleton Gene Families AT3G12110 96.8 4.7e-215 744.2
Cmo06g00095 CST 1 377 Cytoskeleton Gene Families AT3G12110 96.8 3.1e-214 741.5
Cmo04g00222 CCT,CST 1 377 Cytoskeleton Gene Families AT3G12110 96.8 4.0e-214 741.1
Cmo07g01037 . 1 377 Cytoskeleton Gene Families AT3G12110 96.6 6.8e-214 740.3
Cmo20g00447 CST 1 377 Cytoskeleton Gene Families AT3G12110 96.3 8.9e-214 740.0
Cmo14g00419 CST 1 377 Cytoskeleton Gene Families AT3G12110 96.6 1.2e-213 739.6
Cmo04g01263 CCT,CST 1 377 Cytoskeleton Gene Families AT3G12110 96.3 2.0e-213 738.8
Cmo15g00397 CCT 1 377 Cytoskeleton Gene Families AT3G12110 96.0 4.4e-213 737.6
Cmo07g00807 CCT 1 377 Cytoskeleton Gene Families AT3G12110 95.5 1.3e-212 736.1
Cmo02g00620 CCT,CST 1 377 Cytoskeleton Gene Families AT3G12110 95.5 1.3e-212 736.1
Cmo19g00310 . 1 377 Cytoskeleton Gene Families AT3G12110 95.0 3.7e-212 734.6
Cmo11g01508 . 1 377 Cytoskeleton Gene Families AT3G12110 95.0 8.3e-212 733.4
Cmo20g01080 CCT,CST 1 396 Cytoskeleton Gene Families AT3G12110 90.9 3.9e-209 724.5
Cmo04g02766 . 270 626 Cytoskeleton Gene Families AT3G12110 96.1 3.9e-201 698.0
Cmo03g01068 . 34 393 Cytoskeleton Gene Families AT3G12110 95.3 3.3e-200 694.9
Cmo03g00438 . 1 357 Cytoskeleton Gene Families AT3G12110 95.2 6.2e-199 690.6
Cmo07g00807 CCT 1 377 Cytoskeleton Gene Families AT3G18780 93.1 6.6e-209 723.8
Cmo02g00620 CCT,CST 1 377 Cytoskeleton Gene Families AT3G18780 93.1 6.6e-209 723.8
Cmo04g01263 CCT,CST 1 377 Cytoskeleton Gene Families AT3G18780 92.3 1.5e-208 722.6
Cmo15g00397 CCT 1 377 Cytoskeleton Gene Families AT3G18780 92.3 1.5e-208 722.6
Cmo02g00807 CST 35 411 Cytoskeleton Gene Families AT3G18780 91.8 5.6e-208 720.7
Cmo06g00095 CST 1 377 Cytoskeleton Gene Families AT3G18780 91.8 7.3e-208 720.3
Cmo14g00419 CST 1 377 Cytoskeleton Gene Families AT3G18780 91.8 7.3e-208 720.3
Cmo19g00310 . 1 377 Cytoskeleton Gene Families AT3G18780 92.0 1.6e-207 719.2
Cmo11g01508 . 1 377 Cytoskeleton Gene Families AT3G18780 92.3 1.6e-207 719.2
Cmo04g00222 CCT,CST 1 377 Cytoskeleton Gene Families AT3G18780 91.5 2.1e-207 718.8
Cmo07g01037 . 1 377 Cytoskeleton Gene Families AT3G18780 91.8 1.1e-206 716.5
Cmo20g00447 CST 1 377 Cytoskeleton Gene Families AT3G18780 91.2 3.1e-206 714.9
Cmo20g01080 CCT,CST 1 396 Cytoskeleton Gene Families AT3G18780 88.6 2.0e-205 712.2
Cmo04g02766 . 270 626 Cytoskeleton Gene Families AT3G18780 92.7 3.4e-197 684.9
Cmo03g01068 . 34 398 Cytoskeleton Gene Families AT3G18780 91.8 1.3e-196 682.9
Cmo03g00438 . 1 357 Cytoskeleton Gene Families AT3G18780 91.3 1.7e-193 672.5
Cmo07g00807 CCT 1 377 Cytoskeleton Gene Families AT1G49240 93.4 2.3e-209 725.3
Cmo02g00620 CCT,CST 1 377 Cytoskeleton Gene Families AT1G49240 93.4 2.3e-209 725.3
Cmo04g01263 CCT,CST 1 377 Cytoskeleton Gene Families AT1G49240 92.6 5.0e-209 724.2
Cmo15g00397 CCT 1 377 Cytoskeleton Gene Families AT1G49240 92.6 5.0e-209 724.2
Cmo06g00095 CST 1 377 Cytoskeleton Gene Families AT1G49240 92.0 2.5e-208 721.8
Cmo14g00419 CST 1 377 Cytoskeleton Gene Families AT1G49240 92.0 2.5e-208 721.8
Cmo19g00310 . 1 377 Cytoskeleton Gene Families AT1G49240 92.3 5.6e-208 720.7
Cmo11g01508 . 1 377 Cytoskeleton Gene Families AT1G49240 92.6 5.6e-208 720.7
Cmo04g00222 CCT,CST 1 377 Cytoskeleton Gene Families AT1G49240 91.8 7.3e-208 720.3
Cmo02g00807 CST 35 411 Cytoskeleton Gene Families AT1G49240 91.5 1.2e-207 719.5
Cmo07g01037 . 1 377 Cytoskeleton Gene Families AT1G49240 91.5 2.3e-206 715.3
Cmo20g01080 CCT,CST 1 396 Cytoskeleton Gene Families AT1G49240 88.9 6.8e-206 713.8
Cmo20g00447 CST 1 377 Cytoskeleton Gene Families AT1G49240 91.0 6.8e-206 713.8
Cmo04g02766 . 270 626 Cytoskeleton Gene Families AT1G49240 92.7 3.4e-197 684.9
Cmo03g01068 . 34 398 Cytoskeleton Gene Families AT1G49240 92.1 4.4e-197 684.5
Cmo03g00438 . 1 357 Cytoskeleton Gene Families AT1G49240 91.0 3.9e-193 671.4
Cmo07g00807 CCT 1 377 Cytoskeleton Gene Families AT5G09810 98.4 1.1e-216 749.6
Cmo02g00620 CCT,CST 1 377 Cytoskeleton Gene Families AT5G09810 98.4 1.1e-216 749.6
Cmo11g01508 . 1 377 Cytoskeleton Gene Families AT5G09810 96.6 6.1e-215 743.8
Cmo19g00310 . 1 377 Cytoskeleton Gene Families AT5G09810 95.8 4.0e-214 741.1
Cmo20g01080 CCT,CST 1 396 Cytoskeleton Gene Families AT5G09810 93.7 3.4e-213 738.0
Cmo02g00807 CST 35 411 Cytoskeleton Gene Families AT5G09810 95.2 1.3e-212 736.1
Cmo20g00447 CST 1 377 Cytoskeleton Gene Families AT5G09810 95.5 2.9e-212 734.9
Cmo06g00095 CST 1 377 Cytoskeleton Gene Families AT5G09810 95.8 3.7e-212 734.6
Cmo14g00419 CST 1 377 Cytoskeleton Gene Families AT5G09810 95.8 3.7e-212 734.6
Cmo15g00397 CCT 1 377 Cytoskeleton Gene Families AT5G09810 95.5 8.3e-212 733.4
Cmo07g01037 . 1 377 Cytoskeleton Gene Families AT5G09810 95.5 1.1e-211 733.0
Cmo04g01263 CCT,CST 1 377 Cytoskeleton Gene Families AT5G09810 95.2 1.4e-211 732.6
Cmo04g00222 CCT,CST 1 377 Cytoskeleton Gene Families AT5G09810 95.0 4.1e-211 731.1
Cmo03g01068 . 34 393 Cytoskeleton Gene Families AT5G09810 97.8 1.1e-203 706.4
Cmo04g02766 . 270 626 Cytoskeleton Gene Families AT5G09810 95.5 7.3e-200 693.7
Cmo03g00438 . 1 357 Cytoskeleton Gene Families AT5G09810 95.0 3.1e-198 688.3
Cmo05g01377 CST 1 131 Cytoskeleton Gene Families AT2G19760 75.6 2.7e-56 215.3
Cmo05g01378 . 1 133 Cytoskeleton Gene Families AT2G19760 75.9 3.5e-56 214.9
Cmo12g01309 CST 1 133 Cytoskeleton Gene Families AT2G19760 76.7 3.5e-56 214.9
Cmo08g00707 CCT,CST,ECH 1 131 Cytoskeleton Gene Families AT2G19760 73.3 2.2e-55 212.2
Cmo17g00727 CCT,CST,ECH 1 138 Cytoskeleton Gene Families AT2G19760 72.5 2.9e-55 211.8
Cmo14g01321 CCT,CST,ECH 1 129 Cytoskeleton Gene Families AT2G19760 72.9 1.6e-53 206.1
Cmo01g00092 CCT,CST,ECH 1 129 Cytoskeleton Gene Families AT2G19760 72.9 4.7e-53 204.5
Cmo05g01377 CST 1 131 Cytoskeleton Gene Families AT4G29350 75.6 7.7e-56 213.8
Cmo08g00707 CCT,CST,ECH 1 131 Cytoskeleton Gene Families AT4G29350 74.0 1.7e-55 212.6
Cmo12g01309 CST 188 318 Cytoskeleton Gene Families AT4G29350 75.6 2.9e-55 211.8
Cmo17g00727 CCT,CST,ECH 1 138 Cytoskeleton Gene Families AT4G29350 72.5 8.5e-55 210.3
Cmo05g01378 . 1 133 Cytoskeleton Gene Families AT4G29350 74.4 1.5e-54 209.5
Cmo14g01321 CCT,CST,ECH 1 131 Cytoskeleton Gene Families AT4G29350 71.0 3.0e-52 201.8
Cmo01g00092 CCT,CST,ECH 1 131 Cytoskeleton Gene Families AT4G29350 69.5 2.0e-51 199.1
Cmo12g01309 CST 1 133 Cytoskeleton Gene Families AT4G29340 85.1 6.0e-64 240.7
Cmo05g01378 . 1 133 Cytoskeleton Gene Families AT4G29340 83.6 3.9e-63 238.0
Cmo08g00707 CCT,CST,ECH 1 131 Cytoskeleton Gene Families AT4G29340 76.1 1.3e-58 223.0
Cmo17g00727 CCT,CST,ECH 1 138 Cytoskeleton Gene Families AT4G29340 73.0 5.5e-57 217.6
Cmo05g01377 CST 1 131 Cytoskeleton Gene Families AT4G29340 71.6 1.3e-55 213.0
Cmo01g00092 CCT,CST,ECH 1 131 Cytoskeleton Gene Families AT4G29340 70.1 4.8e-53 204.5
Cmo14g01321 CCT,CST,ECH 1 131 Cytoskeleton Gene Families AT4G29340 69.4 2.4e-52 202.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000079 8 8 7 8 6 8 16 8 8 7 8 8 15 7 7 14 8 15 16 8 7 7 6 8 8 8 7 14 15 6 276
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo03g01068 Cmo_Chr03 FPKM 3.587602 3.319394 4.306341 4.598552 6.749494 7.509351 7.624458 5.814713 6.895285 7.728857