Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g01073 ATGGCAATACCCATGTCCCTTGTTCCCTGTTCCAGTTTTGCTTCTTATTCTTCCTCCTCGTTTCCATTGCAATCTCGTAATCCCTTCAAGCCCCATCGCCATGGTTTAAAGATGGATAATCCCACCTCAAATGGGTCGCTCGTTGTTAGCTGTTCCGCTCGCGAAATGGGTTCCAACTCTGACCCTTTGAACGGGAGCATGAAGCATCAGATATCATCTATGGCTCCTAGCGGGATGACACTAAATGAAGCTTCCATGTCCATGCCATCGTATAAATGGCGAAGAGTATTGCTTAAAGTAAGCGGTGAAGCACTTGCTGGTGATCGGTTGCAGAATATTGATCCGAAGGTTACTATGGCGATTGCGAGGGAGGTTGCAGCTGTAACGCGTCTGGGCATTGAGGTTGCTATAGTAGTTGGTGGGGGTAACATTTTTCGTGGATCGTCGTGGGCTGGATGTAGTGGCTTAGACCGTTCGTCTGCCGATTACATTGGGATGTTGGCAACAGTGATGAATGCTATATTTCTTCAAGCCACAATGGAGAGTATAGGCATTCCCACACGAGTGCAGACGGCGTTTCGTATGTCCGAGGTTGCGGAGCCATATATTCGACGTAGGGCTGTGAGGCACTTGGAAAAAGGCAGAGTTGTGATCTTTGCAGCTGGTATAGGCAATCCGTTTTTCACTACAGATACTGCAGCGGCCCTCCGTTGCGCAGAAATTAATGCAGAAGTTCTGCTGAAAGCGACAAACGTTGACGGGGTTTACGATGATGATCCGAAACAAAACACGAATGCACGTCTACTCGAGACTCTTACATACCAGGAAGTAACGTCGAAGGACCTTTCAGTGATGGACATGACAGCGATTACTCTATGTCAGGAAAACAACATTCCTGTTGTTGTCTTCAATCTAACAAAACCGGACAACATCTCGAAAGCCATAAAGGGCGAGAGAGTCGGGACGTTGATCGGAGGAACATGGAACTCAAACTCTGCTTTCTTTCGGCCATTAACAATGACGAAGTTCAGAAAGCTTGGTCGAGATGCAGCTGAACGAGTGTCTATGCTGAGAACAATGGTTTCTCAGTTGGTGAAGCACGAGCGTATTGAGACTACTGTTCCAAAGGCTAAAGAAATTCGGCGGCTTGCTGATAACATGGTTCAATTTGGAAAAGAGGGTTCCCTTTGTGCTTCAAGGCATGCTGCTGCATTTGTAAGAGGCGATGATGTCCTTCACAAACTATTCACAGAACTGGCTTATCGATACAAATATAGAGCTGGTGGATATACAAGACTTCTTCGGACGCGTATACGTGTTGGCGATGCTGCACCAATGGCTTATATAGAATTTATTGATAGAGAAAATGAGCTGAGACAGTCGAAGCCTCCAAATCCCCAACCACCTCAGAAGGCTCCAATGGATCCATGGACAAGATCACGGCTTAGCAAGCAGTTCGCACCACCCAAAGAGATCAAATCTGACTCTGAAATCTGA 1497 46.69 MAIPMSLVPCSSFASYSSSSFPLQSRNPFKPHRHGLKMDNPTSNGSLVVSCSAREMGSNSDPLNGSMKHQISSMAPSGMTLNEASMSMPSYKWRRVLLKVSGEALAGDRLQNIDPKVTMAIAREVAAVTRLGIEVAIVVGGGNIFRGSSWAGCSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGIGNPFFTTDTAAALRCAEINAEVLLKATNVDGVYDDDPKQNTNARLLETLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLTKPDNISKAIKGERVGTLIGGTWNSNSAFFRPLTMTKFRKLGRDAAERVSMLRTMVSQLVKHERIETTVPKAKEIRRLADNMVQFGKEGSLCASRHAAAFVRGDDVLHKLFTELAYRYKYRAGGYTRLLRTRIRVGDAAPMAYIEFIDRENELRQSKPPNPQPPQKAPMDPWTRSRLSKQFAPPKEIKSDSEI 498
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8022886 8030495 + CmoCh03G010730.1 Cmo03g01073 378536

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g01073 498 CDD AAK_UMPK-PyrH-Ec 94 325 IPR015963 GO:0005737|GO:0006221|GO:0033862
Cmo03g01073 498 Hamap 50S ribosomal protein L17 [rplQ]. 341 452 IPR000456 GO:0003735|GO:0005840|GO:0006412
Cmo03g01073 498 PANTHER URIDYLATE KINASE 77 327 - -
Cmo03g01073 498 Gene3D - 85 328 IPR036393 -
Cmo03g01073 498 TIGRFAM pyrH_bact: UMP kinase 94 324 IPR015963 GO:0005737|GO:0006221|GO:0033862
Cmo03g01073 498 Gene3D Ribosomal protein L17 336 452 IPR036373 GO:0003735|GO:0005840|GO:0006412
Cmo03g01073 498 TIGRFAM L17: ribosomal protein bL17 343 453 IPR000456 GO:0003735|GO:0005840|GO:0006412
Cmo03g01073 498 Pfam Ribosomal protein L17 356 452 IPR000456 GO:0003735|GO:0005840|GO:0006412
Cmo03g01073 498 SUPERFAMILY Carbamate kinase-like 91 324 IPR036393 -
Cmo03g01073 498 Pfam Amino acid kinase family 95 304 IPR001048 -
Cmo03g01073 498 Hamap Uridylate kinase [pyrH]. 91 325 IPR015963 GO:0005737|GO:0006221|GO:0033862
Cmo03g01073 498 MobiDBLite consensus disorder prediction 455 498 - -
Cmo03g01073 498 SUPERFAMILY Prokaryotic ribosomal protein L17 341 455 IPR036373 GO:0003735|GO:0005840|GO:0006412
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g01073 K09903 pyrH; uridylate kinase [EC:2.7.4.22] - csv:101221565 563.148
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g01073 Cmo-Chr3:8022886 Cmo14g00251 Cmo-Chr14:1150808 6.41E-91 dispersed
Cmo04g03059 Cmo-Chr4:21397682 Cmo03g01073 Cmo-Chr3:8022886 1.50E-06 dispersed
Cmo15g00117 Cmo-Chr15:558174 Cmo03g01073 Cmo-Chr3:8022886 4.22E-07 dispersed
Cmo02g00442 Cmo-Chr2:2313873 Cmo03g01073 Cmo-Chr3:8022886 9.66E-135 transposed
Cmo03g01073 Cmo-Chr3:8022886 Cmo07g00815 Cmo-Chr7:3774038 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1276 . . . . . . . . . . Cma03g01087 . Car03g00977 . Sed14g0216 . . Bhi03g01372 Tan03g1320 Cmetu08g1085 . . . . Cla01g01524 Cam01g1594 Cec04g1238 Cco04g1308 . . Cre04g1183 . . . . Lsi01g01140 . . Cme08g01075 . . . . . . . . . Cmo03g01073 . . . . . . . . . . . . . . . . . . . . . . Csa06g02791 Chy02g01044 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007541 1 1 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 2 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo03g01073 Cmo_Chr03 FPKM 3.670308 4.595618 5.733983 6.67987 4.882622 2.218072 4.702342 2.391213 3.202548 3.314506