Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g01075 ATGGAGCCCCATCACCTCTCAAACCCTTCTCCCCATCTCCATCACTCCGCCATGGAAGACCATCATATCCTTCACCGTCATCACCACGTCCACGTCCACGACCCTGACCCTGATCCTGACCCTGACCCTGACCCTGATTCCATTTGGTCGTCGTTGTTGCCTTTTCATCTCCCCGACCCTCATCAACAATTCCCTAGCTCCTCAACCCACCTGTTGATCAGCTACGCTACTCCGAGTTCTAGGGTAGATAATGACGAAGAGCCGGAAGAAGAGCTTGGTGCCATGAAAGAGATGATGTATAAGATCGCCGCAATGCAACCGGTGGATATCGATCCTTCGACTATCCGAAAGCCCAAACGACGAAATGTACGGATTAGCGATGACCCGCAAAGCATTGCAGCTCGTCTTCGACGAGAGAGGATCAGTGAGAAGATCAGAATTCTTCAAAGGCTTGTGCCTGGTGGGACGAAGATGGACACAGCTTCAATGCTGGATGAAGCAATTCGCTATGTCAAATTCTTAAAGAGGCAAATCCGGTTGCTGCAGTCAAGTGATCAGCCGCAACAGCCAAGCACTGACGGCGGAGCCGCCGCTGGAGGGTGGCCTCTTACATTCCATAAGGCTGATGGCTCAGCCTCCTCGTCCACGTCCATGGAGACTACGCCTGCCATTATTACACCATCAGGATGGTGA 693 52.38 MEPHHLSNPSPHLHHSAMEDHHILHRHHHVHVHDPDPDPDPDPDPDSIWSSLLPFHLPDPHQQFPSSSTHLLISYATPSSRVDNDEEPEEELGAMKEMMYKIAAMQPVDIDPSTIRKPKRRNVRISDDPQSIAARLRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLQSSDQPQQPSTDGGAAAGGWPLTFHKADGSASSSTSMETTPAIITPSGW 230
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8046980 8047914 + CmoCh03G010750.1 Cmo03g01075 378538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g01075 230 CDD bHLH_AtIND_like 126 186 - -
Cmo03g01075 230 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 12 223 IPR045843 GO:0003700|GO:0006355
Cmo03g01075 230 Gene3D - 128 192 IPR036638 GO:0046983
Cmo03g01075 230 Pfam Helix-loop-helix DNA-binding domain 134 174 IPR011598 GO:0046983
Cmo03g01075 230 SMART finulus 131 180 IPR011598 GO:0046983
Cmo03g01075 230 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 125 174 IPR011598 GO:0046983
Cmo03g01075 230 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 12 223 - -
Cmo03g01075 230 MobiDBLite consensus disorder prediction 182 230 - -
Cmo03g01075 230 MobiDBLite consensus disorder prediction 27 49 - -
Cmo03g01075 230 MobiDBLite consensus disorder prediction 208 230 - -
Cmo03g01075 230 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 130 186 IPR036638 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo03g01075 Cmo07g00819 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g01075 Cmo-Chr3:8046980 Cmo05g00176 Cmo-Chr5:764159 3.86E-37 dispersed
Cmo13g00497 Cmo-Chr13:5935284 Cmo03g01075 Cmo-Chr3:8046980 1.40E-13 dispersed
Cmo18g00505 Cmo-Chr18:3588605 Cmo03g01075 Cmo-Chr3:8046980 4.86E-13 dispersed
Cmo02g00585 Cmo-Chr2:3473200 Cmo03g01075 Cmo-Chr3:8046980 4.32E-46 wgd
Cmo03g01075 Cmo-Chr3:8046980 Cmo07g00819 Cmo-Chr7:3798815 1.73E-92 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9452 PF00010 HLH 1.40E-06 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g01075 - - csv:101222266 315.849